CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.53324.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 73.7 TaAffx.53324.1.S1_x_at CA693604 - - 9e+0 At4g09070 - S.X. H.G.
0.67 86.3 Ta.7649.3.A1_a_at BQ161111 - - 6e-3 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.64 83.6 Ta.7649.1.S1_x_at BJ242983 - - 2e-4 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.59 79.8 Ta.7649.1.S1_at BJ242983 - - 2e-4 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.57 79.2 Ta.7649.3.A1_at BQ161111 - - 6e-3 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.57 79.2 Ta.7649.2.S1_x_at BJ321934 - - 8e-5 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.54 75.5 Ta.494.1.S1_at CK155824 - - 5e-30 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) S.X. H.G.
0.46 66.8 Ta.25402.1.S1_at CK160504 - - 4e-42 At1g11430 plastid developmental protein DAG, putative S.X. H.G.
0.40 58.4 Ta.1517.1.S1_at CA629173 porphobilinogen deaminase - 1e-5 At5g08280 HEMC (HYDROXYMETHYLBILANE SYNTHASE) S.X. H.G.
0.36 51.9 Ta.4937.1.A1_at BQ166316 - - 3e-1 At1g06515 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.6 99.2 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.2 99.2 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.0 99.1 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.9 99.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.9 98.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8 98.7 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.9 98.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7 97.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2 97.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 3e-157 553 TaAffx.53324.1.S1_at CA693604 - - 9e+0 At4g09070 - C.G. S.X.
0.29 2e-47 188 Ta.8044.1.A1_at BQ161176 - - 6e+0 At5g20010 RAN-1 C.G. S.X.
0.31 2e-22 105 Ta.10657.1.A1_at BQ166205 - - 3e+0 At3g42155 catalytic/ hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.03 2e+0 32 Ta.1934.1.S1_at BQ166130 - - 2e+0 At1g67110 CYP735A2 C.G. S.X.
0.04 2e+0 32 Ta.12517.2.S1_a_at CA681881 - - 2e-2 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.04 2e+0 32 Ta.12517.2.S1_x_at CA681881 - - 2e-2 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.01 2e+0 32 Ta.12517.1.S1_at CK163074 - - 1e-9 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
0.02 2e+0 32 Ta.10131.1.A1_at CD373665 - - 4e-2 At5g08500 transmembrane CLPTM1 family protein C.G. S.X.
0.06 1e+1 30 TaAffx.93438.1.S1_at BJ210840 - - 4e-1 At3g61060 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e+0 30 Arabidopsis thaliana At4g09070 826485 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.05 3e+0 32 Glycine max Gma.389.1.A1_at AW349686 - - 3e+0 At5g14920 gibberellin-regulated family protein C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HVSMEf0002H04r2_at HVSMEf0002H04r2 - - 3e+0 At5g13250 unknown protein C.G. S.X.
0.03 5e+0 32 Oryza sativa Os.51550.1.S1_at - - - 0 C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.207065.1.S1_at pmrna14005 hypothetical protein - 1e+0 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) C.G. S.X.
0.04 1e+1 28 Vitis vinifera 1621328_at CK138241.1 - - 9e-1 At4g18470 SNI1 C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.453.1.S1_at AI677167 - - 1e-2 At1g71350 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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