Gene omics information

Query gene ID	TaAffx.52516.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.52516.1.S1_at	CA706161	-	-	1e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.20393.1.S1_x_at	CA485809	-	-	3e-1	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	S.X.	H.G.	Please select
0.55	76.8	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	S.X.	H.G.	Please select
0.48	69.0	Ta.20393.1.S1_at	CA485809	-	-	3e-1	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	S.X.	H.G.	Please select
0.47	67.9	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	S.X.	H.G.	Please select
0.42	60.9	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	S.X.	H.G.	Please select
0.38	54.7	TaAffx.30726.1.S1_at	CA622623	-	-	1e+1	At5g20500	glutaredoxin, putative	S.X.	H.G.	Please select
0.32	44.4	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.31	42.7	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
9.5	99.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM111243	genotype C10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.6	97.0	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6	95.6	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM138208	genotype H23 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-5	48	TaAffx.5498.1.S1_at	CA708881	-	-	2e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Ta.30534.1.S1_at	BJ287888	-	-	2e+0	At2g20830	folic acid binding / transferase	C.G.	S.X.	Please select
0.05	6e-2	38	TaAffx.94294.1.S1_at	BG907788	-	-	8e-1	At2g35850	unknown protein	C.G.	S.X.	Please select
0.05	6e-2	38	TaAffx.112031.1.S1_at	CA627797	-	-	2e+0	At2g01905	CYCJ18 (CYCLIN J18)	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.9520.1.S1_at	D38485.1	Ps16 protein	-	2e-7	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28242.1.S1_at	CK216078	-	-	3e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28242.1.S1_x_at	CK216078	-	-	3e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.04	2e-1	36	Ta.20601.1.S1_at	CA486487	-	-	1e-1	At3g13610	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.1608.1.S1_at	BE443827	-	-	6e+0	At4g22550	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	PsAffx.psMA015xC13f_at	PsAffx.psMA015xC13f	-	-	9e-2	At5g56770	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HV_CEb0014I12f_at	HV_CEb0014I12f	-	-	3e+0	At3g52940	FK (FACKEL)	C.G.	S.X.	Please select
0.17	2e-9	63	Oryza sativa	Os09g0535500	AK108282.1	-	Zn-finger, RING domain containing protein	7e+0	At4g35480	RHA3B	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.213029.1.S1_at	pmrna25486	hypothetical protein	-	1e-2	At4g22410	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	28	Vitis vinifera	1621215_at	CF373071	hypothetical protein LOC100251138	-	1e+0	At5g22560	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zea mays	Zm.9932.1.A1_at	CF005271	hypothetical protein LOC100278059	-	3e-1	At1g76240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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