Gene omics information

Query gene ID	TaAffx.51913.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	83.6	TaAffx.51913.1.S1_x_at	CA716536	-	-	8e-1	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	S.X.	H.G.	Please select
0.82	92.7	TaAffx.9337.1.S1_at	CA602090	-	-	4e+0	At2g30130	ASL5	S.X.	H.G.	Please select
0.75	89.8	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	S.X.	H.G.	Please select
0.73	89.1	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	S.X.	H.G.	Please select
0.71	88.0	TaAffx.112440.1.S1_at	CA621396	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	S.X.	H.G.	Please select
0.64	83.6	TaAffx.51734.1.S1_x_at	CA719694	-	-	2e+0	At1g02780	emb2386 (embryo defective 2386)	S.X.	H.G.	Please select
0.63	83.1	TaAffx.13750.2.A1_at	CA647055	-	-	4e+0	At5g51545	LPA2 (low psii accumulation2)	S.X.	H.G.	Please select
0.59	79.8	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	S.X.	H.G.	Please select
0.56	78.6	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	S.X.	H.G.	Please select
0.55	76.8	TaAffx.13785.2.S1_at	CA708591	-	-	7e-8	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
78.4	100.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
26.7	99.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
21.8	99.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
19.1	99.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.4	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.0	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	TaAffx.29002.1.S1_at	CA652722	-	-	2e+1	At5g50440	MEMB12 (MEMBRIN 12)	C.G.	S.X.	Please select
0.02	5e-2	38	Ta.7127.1.S1_at	BQ170249	-	-	9e-10	At5g22130	PNT1 (PEANUT 1)	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.106377.1.S1_at	CA719606	-	-	5e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.6435.1.S1_a_at	CK195702	-	-	8e-1	At2g30810	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.6435.1.S1_at	CK195702	-	-	8e-1	At2g30810	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Ta.256.1.S1_at	AF097363.1	heat shock protein 101	-	3e-8	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select
0.03	8e-1	34	TaAffx.99402.1.S1_x_at	CK208737	-	-	5e-1	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	C.G.	S.X.	Please select
0.03	8e-1	34	TaAffx.99402.1.S1_at	CK208737	-	-	5e-1	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	C.G.	S.X.	Please select
0.04	8e-1	34	TaAffx.55623.1.S1_at	CA663496	-	-	1e+1	At5g63480	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At5g56110	835710	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-2	38	Glycine max	PsAffx.psMC007xE22f_s_at	PsAffx.psMC007xE22f	-	-	2e-1	At2g31450	endonuclease-related	C.G.	S.X.	Please select
0.03	4e-1	34	Hordeum vulgare	Contig6346_at	Contig6346	-	-	5e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.03	4e-1	36	Oryza sativa	OsAffx.855.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.207769.1.S1_at	pmrna15453	hypothetical protein	-	6e-2	At1g70690	HWI1 (HOPW1-1-INDUCED GENE1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	30	Vitis vinifera	1620030_at	CF210795	hypothetical LOC100264164	-	2e-5	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.7965.1.A1_at	BM074125	hypothetical protein LOC100277125	-	3e-1	At5g27440	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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