Gene omics information

Query gene ID	TaAffx.51452.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.51452.1.S1_at	CA724758	-	-	1e+1	At5g56369	-	S.X.	H.G.	Please select
0.67	86.3	TaAffx.66653.1.S1_at	BG907780	-	-	1e+1	At5g37550	unknown protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.51452.1.S1_x_at	CA724758	-	-	1e+1	At5g56369	-	S.X.	H.G.	Please select
0.60	81.0	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	S.X.	H.G.	Please select
0.43	62.2	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.107578.1.S1_at	CA697808	-	-	1e+0	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.7	99.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.5	99.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.5	99.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.1	99.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	734	TaAffx.51452.1.S1_x_at	CA724758	-	-	1e+1	At5g56369	-	C.G.	S.X.	Please select
0.38	1e-58	226	Ta.185.1.S1_at	CK205872	wali7 protein	-	6e-1	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	C.G.	S.X.	Please select
0.20	3e-19	95	TaAffx.8971.1.S1_at	CA617158	-	-	1e+0	At1g21940	unknown protein	C.G.	S.X.	Please select
0.08	6e-8	57	TaAffx.114436.1.S1_at	CA593183	-	-	2e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	C.G.	S.X.	Please select
0.06	6e-8	57	Ta.3622.2.A1_a_at	BM140446	-	-	4e+0	At4g08867	unknown protein	C.G.	S.X.	Please select
0.05	9e-7	54	TaAffx.87283.1.S1_at	CA593032	-	-	5e+0	At5g57640	-	C.G.	S.X.	Please select
0.06	9e-7	54	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.08	9e-7	54	TaAffx.78865.1.S1_at	CA725570	-	-	2e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.06	9e-7	54	TaAffx.51288.1.S1_at	CA728019	-	-	4e+0	At1g24200	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At5g56369	3771520	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-6	54	Glycine max	HgAffx.13072.1.S1_at	CB374911	-	-	2e+0	At1g11684	unknown protein	C.G.	S.X.	Please select
0.40	2e-67	254	Hordeum vulgare	Contig366_at	Contig366	-	-	2e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	C.G.	S.X.	Please select
0.16	3e-23	109	Oryza sativa	Os11g0147800	AK102998.1	-	Wali7 protein (Fragment)	4e-1	At1g14620	DECOY (DECOY)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-6	54	Populus trichocarpa	PtpAffx.114096.2.A1_a_at	CV257943	-	-	6e+0	At4g01995	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.11	1e-19	95	Zea mays	Zm.8944.1.S1_at	CO520184	stem-specific protein TSJT1	-	6e-1	At5g19140	AILP1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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