Gene omics information

Query gene ID	TaAffx.5065.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.5065.1.S1_at	CA723799	-	-	4e+0	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	S.X.	H.G.	Please select
0.50	72.4	Ta.8883.2.S1_x_at	BQ162560	-	-	2e-6	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	S.X.	H.G.	Please select
0.50	72.4	Ta.8883.2.S1_at	BQ162560	-	-	2e-6	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	S.X.	H.G.	Please select
0.16	18.2	TaAffx.83853.1.S1_at	CA649565	-	-	4e+0	At3g25220	FKBP15-1	S.X.	H.G.	Please select
0.02	3.6	Ta.6789.2.S1_x_at	BJ225484	-	-	1e-18	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	S.X.	H.G.	Please select
0.02	3.6	Ta.5239.1.S1_at	BJ298392	-	-	1e-1	At1g58684	40S ribosomal protein S2, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.7	99.8	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
16.5	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
15.3	99.6	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.9	99.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
11.2	99.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.8	98.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	2e-146	517	Ta.19608.2.S1_x_at	CK211984	-	-	3e-1	At5g50830	unknown protein	C.G.	S.X.	Please select
0.59	2e-146	517	Ta.19608.2.S1_at	CK211984	-	-	3e-1	At5g50830	unknown protein	C.G.	S.X.	Please select
0.19	5e-30	131	Ta.1688.1.S1_at	CA630327	-	-	4e+0	At5g18140	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e-2	40	Ta.5138.1.S1_at	CK199520	-	-	5e-2	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.02	1e-2	40	Ta.5138.1.S1_x_at	CK199520	-	-	5e-2	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.04	6e-2	38	TaAffx.92543.1.S1_at	BJ259898	-	-	1e+0	At1g52590	-	C.G.	S.X.	Please select
0.03	9e-1	34	TaAffx.85788.1.S1_s_at	CA619618	-	-	4e+0	At3g46440	UXS5	C.G.	S.X.	Please select
0.03	9e-1	34	TaAffx.85788.2.S1_at	CA617441	-	-	1e+0	At5g02920	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.03	9e-1	34	TaAffx.35466.1.S1_at	BQ607248	-	-	3e-1	At1g53625	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g37540	829909	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	36	Glycine max	PsAffx.CL1Contig15_at	PsAffx.CL1Contig15	-	-	2e+0	At4g30460	glycine-rich protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig13572_at	Contig13572	-	-	4e+0	At5g12390	FIS1B (FISSION 1B)	C.G.	S.X.	Please select
0.07	5e-7	56	Oryza sativa	Os.10315.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.217514.1.S1_at	pmrna32807	hypothetical protein	-	8e-1	At1g04660	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1619204_at	CF373337	-	-	7e-5	At2g18328	ATRL4 (ARABIDOPSIS RAD-LIKE 4)	C.G.	S.X.	Please select
0.15	5e-13	73	Zea mays	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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