Gene omics information

Query gene ID	TaAffx.50210.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	S.X.	H.G.	Please select
0.71	88.0	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.79437.1.S1_at	CA715704	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	S.X.	H.G.	Please select
0.43	62.2	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.4	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.5	98.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1104	TaAffx.50210.1.S1_s_at	CA744417	-	-	7e-2	At1g60880	AGL56	C.G.	S.X.	Please select
0.35	0	662	Ta.18342.1.A1_at	CD867576	-	-	7e-1	At1g60880	AGL56	C.G.	S.X.	Please select
0.06	5e-6	52	TaAffx.77774.1.S1_at	CA743493	-	-	1e+1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.04	5e-6	52	Ta.21348.1.S1_x_at	U32429.1	sulfur-rich/thionin-like protein	-	6e+0	At1g54880	unknown protein	C.G.	S.X.	Please select
0.04	5e-6	52	Ta.21348.1.S1_s_at	U32429.1	sulfur-rich/thionin-like protein /// sulfur-rich/thionin-like protein	-	6e+0	At1g54880	unknown protein	C.G.	S.X.	Please select
0.06	2e-5	50	Ta.15228.1.S1_x_at	CA746806	-	-	2e+0	At4g29103	unknown protein	C.G.	S.X.	Please select
0.06	2e-5	50	Ta.15228.1.S1_at	CA746806	-	-	2e+0	At4g29103	unknown protein	C.G.	S.X.	Please select
0.04	7e-5	48	TaAffx.77580.1.S1_at	CA745791	-	-	3e-1	At2g29980	FAD3 (FATTY ACID DESATURASE 3)	C.G.	S.X.	Please select
0.05	7e-5	48	TaAffx.77476.1.S1_at	CA747265	-	-	1e+1	At5g05300	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	Arabidopsis thaliana	At1g60880	842380	AGL56	Root Specific	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	Gma.3894.2.S1_at	BI469738	-	-	2e-2	At4g39030	EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)	C.G.	S.X.	Please select
0.02	8e+0	30	Hordeum vulgare	rbaal29b24_at	rbaal29b24	-	-	1e-6	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
Os08g0281200	0	0.02	Oryza sativa	Os07g0489400	9635.m02996	-	-	2e+0	At4g36000	-	C.G.	S.X.	Please select
0.04	1e-1	38	Populus trichocarpa	PtpAffx.93687.1.S1_at	BP927882	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1620517_at	CF414774	similar to cysteine protease 14	-	8e-17	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.04	2e-3	42	Zea mays	Zm.2984.2.A1_at	CF059668	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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