CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.49749.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.49749.1.S1_at CA639769 - - 1e-12 At1g79620 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.07 8.6 Ta.19604.1.S1_at CA653992 - - 8e+0 At5g46795 MSP2 (microspore-specific promoter 2) S.X. H.G.
0.06 7.6 TaAffx.111776.1.S1_x_at CA633994 - - 9e-1 At5g16650 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.03 4.7 Ta.25139.1.S1_at CA615602 - - 7e+0 At5g17150 - S.X. H.G.
0.02 3.6 Ta.11730.1.S1_at CA736324 - - 1e+0 At1g75470 ATPUP15 S.X. H.G.
0.01 2.4 TaAffx.38420.1.S1_at BJ233527 - - 3e-1 At1g51960 IQD27 (IQ-domain 27) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.6 99.7 GSM143511 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.9 99.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
11.3 99.3 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.3 99.0 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
8.9 99.0 GSM143516 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.5 98.9 GSM143525 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8 98.7 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.5 98.6 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4 98.6 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.3 98.6 GSM143524 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 8e-45 180 Ta.7511.1.S1_at CA652130 - - 2e-10 At1g79620 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.08 6e-18 91 Ta.25419.1.S1_a_at CD490505 - - 4e-4 At5g02070 protein kinase-related C.G. S.X.
0.05 1e-9 63 Ta.27254.1.S1_at BT009067.1 - - 6e-10 At2g48010 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) C.G. S.X.
0.05 1e-9 63 Ta.22231.1.S1_at CA639859 - - 5e-4 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.10 2e-8 59 Ta.11135.1.S1_at BQ169457 - - 3e-2 At1g16110 WAKL6 (wall associated kinase-like 6) C.G. S.X.
0.10 2e-8 59 Ta.11135.1.S1_x_at BQ169457 - - 3e-2 At1g16110 WAKL6 (wall associated kinase-like 6) C.G. S.X.
0.06 8e-8 57 Ta.5425.1.S1_at BJ282841 - - 2e-2 At5g41680 protein kinase family protein C.G. S.X.
0.10 3e-7 56 TaAffx.59859.1.S1_at CA594375 - - 2e-17 At3g19300 protein kinase family protein C.G. S.X.
0.06 3e-7 56 TaAffx.36851.1.S1_at BJ311962 - - 2e+0 At5g02800 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-12 73 Arabidopsis thaliana At1g79620 844301 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA - - - C.G. S.X.
0.10 3e-8 59 Glycine max GmaAffx.92535.1.S1_at CF808260 - - 6e-2 At1g26970 protein kinase, putative C.G. S.X.
0.14 1e-26 119 Hordeum vulgare Contig14065_at Contig14065 - - 6e-8 At5g49770 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.19 2e-139 496 Oryza sativa Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.05 2e-2 40 Populus trichocarpa Ptp.3507.1.S1_s_at BP931120 - - 3e-6 At1g09970 LRR XI-23 C.G. S.X.
0.07 2e-11 67 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.10 5e-7 54 Zea mays Zm.11950.1.A1_at CF632814 - - 2e-6 At3g19700 IKU2 (HAIKU2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage