Gene omics information

Query gene ID	TaAffx.47673.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	S.X.	H.G.	Please select
0.60	81.0	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	S.X.	H.G.	Please select
0.60	81.0	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	S.X.	H.G.	Please select
0.50	72.4	TaAffx.47673.2.S1_s_at	CA661229	-	-	4e-3	At5g35460	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.40	58.4	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.9	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
32.1	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
24.9	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	769	Ta.24777.1.A1_at	BJ263995	-	-	2e-2	At5g35460	unknown protein	C.G.	S.X.	Please select
0.49	0	734	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	C.G.	S.X.	Please select
0.41	0	686	TaAffx.47673.2.S1_s_at	CA661229	-	-	4e-3	At5g35460	unknown protein	C.G.	S.X.	Please select
0.41	0	686	TaAffx.47673.2.S1_at	CA661229	-	-	4e-3	At5g35460	unknown protein	C.G.	S.X.	Please select
0.36	8e-130	464	TaAffx.47673.3.A1_at	CA648815	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	C.G.	S.X.	Please select
0.03	1e-2	42	TaAffx.78907.1.S1_at	CA724897	-	-	3e+0	At5g65495	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	40	Ta.6030.2.A1_at	CA694315	-	-	4e-3	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e-1	38	TaAffx.124221.1.S1_x_at	BQ608586	-	-	7e-2	At3g18700	-	C.G.	S.X.	Please select
0.03	7e-1	36	TaAffx.25026.1.S1_x_at	CA708079	-	-	2e-17	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-9	63	Arabidopsis thaliana	At5g35460	833509	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	7e-14	79	Glycine max	GmaAffx.21184.1.S1_at	BU547236	-	-	2e-59	At5g35460	unknown protein	C.G.	S.X.	Please select
0.91	0	1925	Hordeum vulgare	Contig7500_at	Contig7500	-	-	3e-12	At5g35460	unknown protein	C.G.	S.X.	Please select
0.64	0	1078	Oryza sativa	Os01g0585100	AK069774.1	-	Conserved hypothetical protein	1e-17	At5g35460	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-15	85	Populus trichocarpa	PtpAffx.56823.1.S1_at	CV251016	hypothetical protein	-	8e-59	At5g35460	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-24	111	Vitis vinifera	1607598_at	CF210109	hypothetical protein LOC100262878	-	2e-40	At5g35460	unknown protein	C.G.	S.X.	Please select
0.60	0	845	Zea mays	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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