Gene omics information

Query gene ID	TaAffx.43678.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	73.7	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.70	87.2	TaAffx.98004.1.S1_at	BQ801268	-	-	1e+0	At5g28610	-	S.X.	H.G.	Please select
0.59	79.8	Ta.30507.1.S1_at	CK214499	-	-	2e+0	At5g35230	unknown protein	S.X.	H.G.	Please select
0.57	79.2	Ta.4736.1.A1_at	BJ275856	-	-	6e+0	At1g54230	DNA binding	S.X.	H.G.	Please select
0.53	74.9	Ta.4674.1.S1_s_at	BJ269896	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.53	74.9	TaAffx.17013.2.S1_x_at	CA730181	-	-	1e+0	At4g10250	ATHSP22.0	S.X.	H.G.	Please select
0.47	67.9	Ta.13803.1.S1_x_at	CA498188	-	-	3e-2	At1g73630	calcium-binding protein, putative	S.X.	H.G.	Please select
0.45	65.2	Ta.24601.1.S1_at	BQ483742	-	-	1e+0	At1g49400	emb1129 (embryo defective 1129)	S.X.	H.G.	Please select
0.42	60.9	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	S.X.	H.G.	Please select
0.40	58.4	Ta.30507.2.S1_x_at	BJ321266	-	-	4e+0	At4g03600	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	99.5	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
10.1	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.1	99.2	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.5	99.1	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.0	99.0	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.4	98.9	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.4	98.9	GSM143503	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.4	98.9	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.5	98.6	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.9	98.4	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-20	99	Ta.8579.1.A1_at	BQ162082	-	-	4e-4	At2g45040	matrix metalloproteinase	C.G.	S.X.	Please select
0.23	1e-5	50	Ta.22743.1.S1_x_at	CA652933	-	-	7e+0	At4g12090	cornichon family protein	C.G.	S.X.	Please select
0.01	9e-3	40	Ta.7256.1.S1_at	CD892297	-	-	2e-5	At5g20170	unknown protein	C.G.	S.X.	Please select
0.05	4e-2	38	TaAffx.123903.2.S1_at	CA703112	-	-	1e+0	At2g37430	zinc finger (C2H2 type) family protein (ZAT11)	C.G.	S.X.	Please select
0.04	4e-2	38	TaAffx.108908.2.S1_s_at	CA682574	-	-	4e+0	At3g25400	-	C.G.	S.X.	Please select
0.03	4e-2	38	Ta.5686.1.S1_at	BJ293947	-	-	4e-2	At1g61920	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Ta.5686.1.S1_x_at	BJ293947	-	-	4e-2	At1g61920	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	36	TaAffx.110095.1.S1_at	CA664075	-	-	4e+0	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Ta.8296.1.S1_at	AY543533.1	expansin EXPA7	-	2e-1	At1g62333	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e+0	30	Arabidopsis thaliana	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-1	34	Glycine max	PsAffx.CL139Contig1_at	PsAffx.CL139Contig1	-	-	6e+0	At5g46720	-	C.G.	S.X.	Please select
0.09	5e-6	50	Hordeum vulgare	Contig19453_at	Contig19453	-	-	5e+0	Atcg00140	-	C.G.	S.X.	Please select
0.13	8e-14	77	Oryza sativa	Os06g0239100	9634.m01307	-	Peptidase M10A and M12B, matrixin and adamalysinfamily protein	2e-3	At2g45040	matrix metalloproteinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-1	34	Populus trichocarpa	PtpAffx.205050.1.S1_at	pmrna10003	hypothetical protein	-	1e+1	At5g54530	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1621053_at	CF414284	hypothetical protein LOC100258640	-	1e-9	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.05	1e+0	32	Zea mays	Zm.3841.1.A1_at	AW057015	SKP1-like protein 1A	-	3e-3	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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