CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.43139.2.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.6 TaAffx.43139.2.A1_at CA722042 - - 4e+0 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) S.X. H.G.
0.64 83.6 TaAffx.57160.1.S1_at CA635395 - - 4e+0 At1g51823 unknown protein S.X. H.G.
0.48 69.0 Ta.23166.1.S1_at CA735602 - - 8e+0 At5g14380 AGP6 (Arabinogalactan proteins 6) S.X. H.G.
0.46 66.8 TaAffx.6637.1.A1_at CA681177 - - 7e-2 At5g16330 NC domain-containing protein S.X. H.G.
0.42 60.9 Ta.21210.2.S1_a_at CA632730 - - 7e-2 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) S.X. H.G.
0.40 58.4 Ta.7987.2.S1_at CA622553 - - 6e+0 At2g11522 unknown protein S.X. H.G.
0.40 58.4 Ta.614.1.S1_at CA687330 - - 9e-2 At3g25400 - S.X. H.G.
0.34 48.1 TaAffx.53854.1.S1_at CA688433 - - 1e+1 At5g61997 unknown protein S.X. H.G.
0.34 48.1 TaAffx.97533.2.S1_at BG908072 - - 3e+0 At1g65620 AS2 (ASYMMETRIC LEAVES 2) S.X. H.G.
0.33 46.9 Ta.25511.2.S1_at CA663195 - - 4e+0 At2g19000 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.0 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
18.7 99.7 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.5 99.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.8 99.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.9 99.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6 98.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM314266 tissue type: seedling, leaf - rep1 GSE12508 Transcription patterns during wheat development
5.6 97.8 GSM298068 Leaf tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-123 442 Ta.7963.2.S1_x_at CK215257 - - 7e+0 At3g53910 malate dehydrogenase-related C.G. S.X.
0.35 3e-115 414 TaAffx.43139.1.S1_at CK214924 - - 7e+0 At4g36660 unknown protein C.G. S.X.
0.29 2e-60 232 Ta.28133.1.A1_s_at CA636835 - - 6e+0 At5g22200 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.32 4e-56 218 TaAffx.14996.1.S1_at BE213403 - - 7e+0 At3g47550 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.12 5e-15 81 Ta.23129.1.S1_at CA624439 - - 2e+1 At2g10608 unknown protein C.G. S.X.
0.12 5e-15 81 Ta.23129.1.S1_x_at CA624439 - - 2e+1 At2g10608 unknown protein C.G. S.X.
0.12 2e-5 50 Ta.7883.2.S1_at CK214639 - - 3e+1 At5g14345 copper ion binding / electron carrier C.G. S.X.
0.06 2e-5 50 Ta.7749.1.S1_s_at CK194924 - - 6e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.06 2e-5 50 Ta.7749.1.S1_at CK194924 - - 6e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At5g42780 834288 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PM - - - C.G. S.X.
0.02 2e+0 34 Glycine max PsAffx.C73000046_at PsAffx.C73000046 - - 9e+0 At4g13500 unknown protein C.G. S.X.
0.07 1e-7 56 Hordeum vulgare Contig7916_at Contig7916 - - 5e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.15 7e-22 105 Oryza sativa Os11g0644700 AK062734.1 - - 2e-2 At5g63740 zinc finger protein-related C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.220447.1.S1_at pmrna36839 hypothetical protein - 1e+1 At3g55560 AGF2 (AT-hook protein of GA feedback 2) C.G. S.X.
0.04 1e-3 42 Vitis vinifera 1606574_at CF415292 - - 2e-1 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.12 3e-8 57 Zea mays Zm.11904.1.A1_at CF634524 disease resistance response protein 206 - 1e+0 At4g17615 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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