Gene omics information

Query gene ID	TaAffx.39988.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.39988.1.A1_at	BJ275531	-	-	4e+0	At5g52740	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.53	74.9	Ta.9126.1.A1_at	BJ323019	-	-	3e-1	At4g18501	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.25949.1.S1_a_at	CD454725	-	-	6e+0	At5g52830	WRKY27	S.X.	H.G.	Please select
0.50	72.4	Ta.11654.1.S1_at	BQ170534	-	-	1e+0	At1g60970	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select
0.38	54.7	Ta.25217.1.S1_s_at	CD454617	-	-	9e-6	At5g37350	RIO1 family protein	S.X.	H.G.	Please select
0.36	51.9	Ta.22398.1.S1_at	CA597140	-	-	8e+0	At5g20100	unknown protein	S.X.	H.G.	Please select
0.30	40.9	Ta.4701.1.S1_at	BJ270288	-	-	6e+0	At3g43270	pectinesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.8	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.9	97.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-14	79	TaAffx.65722.1.S1_at	BJ230542	-	-	7e+0	At4g27090	60S ribosomal protein L14 (RPL14B)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.8733.1.S1_at	BQ162293	-	-	3e+0	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.106947.1.S1_at	CA708619	-	-	3e+0	At1g14120	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.3307.1.A1_x_at	CD896310	-	-	5e-26	At2g33730	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.11488.1.S1_x_at	CK155265	-	-	3e-24	At3g51550	FER (FERONIA)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.11488.1.S1_s_at	CK155265	-	-	3e-24	At3g51550	FER (FERONIA)	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.70472.1.A1_at	CA722453	-	-	4e+0	At5g26840	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.70472.1.A1_x_at	CA722453	-	-	4e+0	At5g26840	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g52740	835351	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	HgAffx.21404.1.S1_at	BI748349	-	-	7e-1	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	HW09P12u_at	HW09P12u	-	-	4e+0	At4g04330	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.23206.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.60663.1.S1_at	BI125675	-	-	3e+0	At4g03620	myosin heavy chain-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e-2	36	Vitis vinifera	1615984_at	CF204004.1	-	-	2e+0	At3g18590	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17979.1.S1_at	CK828018	hypothetical protein LOC100279661	-	4e+0	At3g09750	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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