Gene omics information

Query gene ID	TaAffx.39457.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	82.0	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	S.X.	H.G.	Please select
0.91	98.2	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.83	93.4	TaAffx.108219.1.S1_at	CA690622	-	-	3e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	S.X.	H.G.	Please select
0.77	90.8	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	S.X.	H.G.	Please select
0.61	82.0	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.26385.1.S1_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.3	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.6	99.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
15.0	99.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.7	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.2	99.5	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.3	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.5	99.3	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9	99.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	2e-62	238	Ta.27761.3.S1_x_at	CK213899	-	-	5e-9	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.42	5e-51	200	Ta.27761.1.S1_x_at	CK213184	-	-	7e-6	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.18	2e-41	169	Ta.30703.1.S1_at	D16457.1	endo-xyloglucan transferase	-	8e-4	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	C.G.	S.X.	Please select
0.52	2e-38	159	TaAffx.121232.1.A1_at	BG907135	-	-	3e-2	At1g29500	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.41	2e-22	105	TaAffx.77596.1.S1_at	CA745526	-	-	4e-1	At2g27670	unknown protein	C.G.	S.X.	Please select
0.16	8e-22	103	TaAffx.50260.1.S1_at	CA743800	-	-	9e-1	At2g04050	MATE efflux family protein	C.G.	S.X.	Please select
0.22	7e-7	54	Ta.27761.2.S1_x_at	CK211226	-	-	5e-3	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.01	6e-1	34	Ta.5519.1.S1_x_at	CK199483	-	-	2e-8	At2g01330	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Ta.5519.1.S1_s_at	CK199483	-	-	2e-8	At2g01330	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e+0	32	Arabidopsis thaliana	Atmg00850	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	Gma.6058.1.A1_at	BE658507	-	-	3e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.39	3e-29	127	Hordeum vulgare	Contig2022_at	Contig2022	-	-	1e-7	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.05	1e+0	34	Oryza sativa	OsAffx.21121.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.101418.1.A1_at	CV265830	hypothetical protein	-	3e-1	At1g66230	MYB20 (myb domain protein 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1613222_at	CB971260	hypothetical protein LOC100241025	-	3e-1	At1g64220	TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)	C.G.	S.X.	Please select
0.09	3e-7	54	Zea mays	Zm.1075.1.A1_at	AY103750.1	photosystem I reaction center subunit psaK	-	7e-9	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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