Gene omics information

Query gene ID	TaAffx.39455.1.A1_at
Gene name	Ferredoxin-nitrite reductase
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	TaAffx.39455.1.A1_at	BG905023	Ferredoxin-nitrite reductase	-	8e+0	At5g26114	unknown protein	S.X.	H.G.	Please select
0.59	79.8	Ta.5633.2.S1_x_at	BG904409	-	-	5e+0	At1g17235	RTFL11 (ROTUNDIFOLIA LIKE 11)	S.X.	H.G.	Please select
0.46	66.8	Ta.5633.2.S1_at	BG904409	-	-	5e+0	At1g17235	RTFL11 (ROTUNDIFOLIA LIKE 11)	S.X.	H.G.	Please select
0.46	66.8	Ta.5633.1.S1_at	BG904383	-	-	3e-4	At1g37130	NIA2 (NITRATE REDUCTASE 2)	S.X.	H.G.	Please select
0.23	29.0	TaAffx.99067.1.A1_x_at	CK211104	-	-	2e+1	At5g37860	copper-binding family protein	S.X.	H.G.	Please select
0.14	15.8	Ta.9096.2.S1_x_at	CA611772	-	-	1e-2	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.2	99.8	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
24.9	99.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
18.7	99.7	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
15.4	99.6	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
14.1	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.2	99.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.7	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.2	99.0	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	9e-77	286	Ta.29662.1.A1_at	CA609047	Ferredoxin-nitrite reductase	-	5e+0	At1g02405	proline-rich family protein	C.G.	S.X.	Please select
0.30	4e-48	190	Ta.24768.1.A1_x_at	BG909242	ferredoxin-nitrite reductase	-	7e-1	At2g15620	NIR1 (NITRITE REDUCTASE 1)	C.G.	S.X.	Please select
0.02	4e-2	38	TaAffx.60746.2.A1_s_at	BU808656	-	-	3e+0	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Ta.12481.1.S1_at	BQ172437	-	-	2e+0	At4g30620	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Ta.25212.1.S1_at	CD453992	-	-	2e-3	At4g34920	1-phosphatidylinositol phosphodiesterase-related	C.G.	S.X.	Please select
0.04	9e+0	30	TaAffx.9314.1.S1_at	CA603293	-	-	4e+0	At5g04347	-	C.G.	S.X.	Please select
0.03	9e+0	30	TaAffx.37190.1.S1_at	BJ294724	-	-	9e-2	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	C.G.	S.X.	Please select
0.04	9e+0	30	TaAffx.26228.1.S1_at	CA690856	-	-	1e-2	At1g76340	integral membrane family protein	C.G.	S.X.	Please select
0.03	9e+0	30	Ta.7022.3.S1_at	BJ319555	-	-	5e+0	At1g19320	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e+0	30	Arabidopsis thaliana	At5g26114	6240233	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	GmaAffx.16000.1.S1_at	AI736864	-	-	3e+0	At5g24190	-	C.G.	S.X.	Please select
0.18	1e-24	111	Hordeum vulgare	Contig8185_at	Contig8185	-	-	1e+0	At2g15620	NIR1 (NITRITE REDUCTASE 1)	C.G.	S.X.	Please select
0.04	3e-10	65	Oryza sativa	Os01g0357100	AK061893.1	-	Ferredoxin--nitrite reductase, chloroplastprecursor (EC 1.7.7.1)	1e-3	At2g15620	NIR1 (NITRITE REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-1	34	Populus trichocarpa	PtpAffx.2249.1.A1_at	CV245917	hypothetical protein	-	3e-8	At2g16940	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1609718_at	CF608771	-	-	1e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	4e-12	69	Zea mays	Zm.13263.1.A1_at	AY109418.1	nitrite reductase	-	1e+0	At2g15620	NIR1 (NITRITE REDUCTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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