Gene omics information

Query gene ID	TaAffx.39351.1.A1_at
Gene name	harpin binding protein 1
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.39351.1.A1_at	BG908483	harpin binding protein 1	-	1e+1	At5g50660	unknown protein	S.X.	H.G.	Please select
0.57	79.2	Ta.9308.1.S1_x_at	CK211929	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	S.X.	H.G.	Please select
0.53	74.9	Ta.7722.3.S1_a_at	BE213326	-	-	2e+0	At3g52210	mRNA capping enzyme family protein	S.X.	H.G.	Please select
0.40	58.4	Ta.6885.1.A1_at	AJ440548	-	-	1e+0	At4g34290	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.36	51.9	Ta.9308.1.S1_at	CK211929	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	S.X.	H.G.	Please select
0.27	35.6	Ta.22292.1.S1_at	CA736459	-	-	6e+0	At3g46666	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.4	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.6	99.1	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.5	99.1	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.7	98.9	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.6	98.9	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.1	98.8	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.7	98.4	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.9	98.0	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.8	97.9	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	3e-87	321	TaAffx.39351.2.A1_at	CA682552	Harpin binding protein 1	-	2e+0	At5g50060	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.04	9e-1	34	TaAffx.86676.1.S1_s_at	CA603044	-	-	8e-1	At1g15900	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.9878.1.S1_at	BJ239519	-	-	1e+0	At5g66440	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Ta.9335.1.S1_s_at	CK194249	-	-	3e-13	At3g51840	ACX4 (ACYL-COA OXIDASE 4)	C.G.	S.X.	Please select
0.01	9e-1	34	Ta.9335.1.S1_at	CK194249	-	-	3e-13	At3g51840	ACX4 (ACYL-COA OXIDASE 4)	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.7378.17.S1_x_at	BJ239545	Protein H2B-8	-	3e-20	At1g07790	HTB1	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.7378.1.S1_at	D37943.1	protein H2B-8	-	3e-20	At1g07790	HTB1	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.7378.18.S1_at	CB307642	-	-	5e-25	At1g07790	HTB1	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.7378.35.S1_x_at	CK217139	-	-	2e-18	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g50660	835136	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-2	38	Glycine max	GmaAffx.87567.1.S1_at	BI942654	-	-	2e-1	At3g51850	CPK13	C.G.	S.X.	Please select
0.38	1e-133	474	Hordeum vulgare	Contig12958_at	Contig12958	-	-	8e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.26	3e-76	286	Oryza sativa	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.220467.1.S1_at	pmrna36860	hypothetical protein	-	1e-1	At5g50660	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	4e-3	40	Vitis vinifera	1607276_at	CF202469.1	-	-	1e-13	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.28	9e-79	291	Zea mays	Zm.705.1.S1_at	BG842406	-	-	4e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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