Gene omics information

Query gene ID	TaAffx.38546.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.5	TaAffx.38546.1.A1_at	BJ219894	-	-	1e+0	At2g35090	unknown protein	S.X.	H.G.	Please select
0.41	59.6	Ta.21586.1.S1_at	CA734606	-	-	3e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.40	58.4	Ta.21586.1.S1_x_at	CA734606	-	-	3e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.39	56.1	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	S.X.	H.G.	Please select
0.37	53.0	Ta.13851.1.S1_at	CK170778	-	-	7e-23	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	S.X.	H.G.	Please select
0.34	48.1	Ta.10521.2.S1_x_at	BQ171091	-	-	4e+0	At5g46870	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.33	46.9	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.32	44.4	Ta.4211.1.A1_at	BJ261144	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	S.X.	H.G.	Please select
0.31	42.7	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	S.X.	H.G.	Please select
0.28	39.2	Ta.7608.2.A1_x_at	CA703665	-	-	5e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM138213	genotype C10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM111242	genotype C10 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM111186	genotype B68 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	722	Ta.5646.1.A1_x_at	BJ286849	-	-	2e+1	At3g48220	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.108535.1.S1_at	CA687287	-	-	8e-1	At1g72530	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.10120.1.S1_at	BJ224992	-	-	6e-14	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.10120.1.S1_x_at	BJ224992	-	-	6e-14	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.26850.1.S1_at	CA684058	-	-	2e-1	At1g80133	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.120564.1.A1_at	BJ216092	-	-	3e-1	At1g13510	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.7865.1.A1_at	BQ160820	-	-	3e+0	At2g40110	yippee family protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.81875.1.S1_at	CA680694	-	-	4e+0	At4g40045	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.8182.1.S1_at	CA632782	-	-	3e-1	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g35090	818075	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	HgAffx.3755.1.A1_at	CK351284	-	-	9e-1	At2g36780	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	HVSMEg0007I24r2_at	HVSMEg0007I24r2	-	-	2e-2	At5g13960	SUVH4 (SU(VAR)3-9 HOMOLOG 4)	C.G.	S.X.	Please select
0.08	4e-11	69	Oryza sativa	Os.6725.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.42627.1.S1_at	CV235595	-	-	5e+0	At5g19630	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1614970_at	CB981650	hypothetical protein LOC100264840	-	4e+0	At1g34750	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zea mays	Zm.9374.1.A1_at	BM268403	-	-	8e-2	At3g12870	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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