CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.38489.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 98.7 TaAffx.38489.1.S1_at BJ228910 - - 1e-3 At3g57040 ARR9 (RESPONSE REGULATOR 9) S.X. H.G.
0.06 7.6 Ta.4617.1.A1_x_at BJ268823 Hypothetical LOC543011 - 8e-7 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) S.X. H.G.
0.04 5.8 Ta.29486.1.A1_a_at CD868705 - - 1e-7 At5g07960 unknown protein S.X. H.G.
0.04 5.8 TaAffx.8469.1.S1_at CA624919 - - 1e+1 At4g13140 - S.X. H.G.
0.03 4.7 TaAffx.84292.1.S1_at CA640524 - - 2e+0 At4g05070 unknown protein S.X. H.G.
0.03 4.7 TaAffx.83300.1.S1_x_at CA659037 - - 4e-3 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) S.X. H.G.
0.03 4.7 TaAffx.82756.1.S1_at CA667679 - - 1e+1 At5g67380 CKA1 (CASEIN KINASE ALPHA 1) S.X. H.G.
0.01 2.4 Ta.2953.1.S1_s_at BJ215386 - - 7e-2 At3g44950 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 98.5 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.5 98.3 GSM111232 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
6.1 98.1 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.0 97.4 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM138162 genotype E5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5 96.9 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9 96.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM138137 Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 2e-98 359 TaAffx.38632.1.S1_at BJ224208 - - 4e-3 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.26 1e-22 107 Ta.11777.1.S1_x_at BQ620561 - - 5e-1 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.18 5e-16 85 Ta.11777.3.S1_at CA622740 - - 9e-1 At1g30515 unknown protein C.G. S.X.
0.13 1e-10 67 Ta.10408.1.S1_at CN009026 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) C.G. S.X.
0.07 4e-4 46 Ta.25262.1.S1_at CD454392 - - 6e-3 At1g66680 AR401 C.G. S.X.
0.11 2e-3 44 Ta.11777.2.S1_at CA701022 - - 3e-1 At5g62720 integral membrane HPP family protein C.G. S.X.
0.01 4e-1 36 Ta.4062.1.S1_a_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) C.G. S.X.
0.01 4e-1 36 Ta.4062.1.S1_x_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) C.G. S.X.
0.01 4e-1 36 Ta.305.1.S1_at CA702511 - - 2e-17 At5g38640 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 44 Arabidopsis thaliana At3g57040 824871 ARR9 (RESPONSE REGULATOR 9) response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2 - - - C.G. S.X.
0.08 1e-4 48 Glycine max Gma.13796.2.S1_at CA819553 - - 2e-7 At3g56380 ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) C.G. S.X.
0.27 9e-22 103 Hordeum vulgare Contig8572_s_at Contig8572 - - 1e-1 At1g47970 unknown protein C.G. S.X.
0.47 8e-47 188 Oryza sativa Os02g0631700 9630.m04024 - ZmRR2 protein (Response regulator 2) 3e-1 At1g59940 ARR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.09 3e-5 50 Populus trichocarpa PtpAffx.213255.1.S1_s_at pmrna25930 type-a response regulator - 3e-37 At2g41310 ATRR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1614472_at CF516440 - - 1e-1 At2g40670 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) C.G. S.X.
0.52 3e-129 460 Zea mays Zm.287.1.S1_at AB042260.1 response regulator - 7e-5 At1g10470 ARR4 (RESPONSE REGULATOR 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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