Gene omics information

Query gene ID	TaAffx.38430.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.38430.1.S1_s_at	BJ232858	-	-	2e-1	At4g01680	MYB55 (myb domain protein 55)	S.X.	H.G.	Please select
0.40	58.4	Ta.6130.3.S1_a_at	CA640718	-	-	4e-3	At3g03890	FMN binding	S.X.	H.G.	Please select
0.23	29.0	Ta.30626.3.S1_a_at	CA654616	-	-	5e-15	At1g69740	HEMB1	S.X.	H.G.	Please select
0.18	21.0	TaAffx.32245.1.S1_at	CA598268	-	-	4e+0	At5g57510	unknown protein	S.X.	H.G.	Please select
0.13	14.6	TaAffx.97149.1.S1_at	CA603246	-	-	2e+0	At3g21170	F-box family protein	S.X.	H.G.	Please select
0.08	9.4	TaAffx.57679.1.S1_at	CA626043	-	-	1e+0	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7	97.9	GSM250884	Tc_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250885	TcLr1_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250889	Tc_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Ta.11603.1.S1_at	CK209924	-	-	3e-16	At1g68410	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.07	5e-2	38	Ta.3212.3.S1_at	BJ213058	-	-	9e-1	At2g17350	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.59446.1.S1_at	CA600351	-	-	3e-1	At2g19680	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select
0.03	8e-1	34	TaAffx.39904.1.A1_at	CK213067	-	-	1e-1	At2g19830	SNF7.2	C.G.	S.X.	Please select
0.02	8e-1	34	Ta.6599.1.S1_at	CD491006	-	-	2e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please select
0.03	8e-1	34	Ta.13582.1.S1_x_at	BQ169378	-	-	6e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	C.G.	S.X.	Please select
0.03	8e-1	34	Ta.13582.1.S1_at	BQ169378	-	-	6e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.85805.1.S1_s_at	CA619454	-	-	3e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.06	3e+0	32	TaAffx.80088.1.S1_at	CA702912	-	-	1e+1	At2g10340	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At4g01680	826853	MYB55 (myb domain protein 55)	Encodes a putative transcription factor (MYB55).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.14295.1.S1_at	BM886763	-	-	1e+1	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig2214_s_at	Contig2214	-	-	8e-2	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.19	3e-5	50	Oryza sativa	Os01g0704200	9629.m04922	-	Conserved hypothetical protein	9e-12	At5g63040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.205627.1.S1_at	pmrna11118	hypothetical protein	-	3e-1	At4g32030	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	32	Vitis vinifera	1608613_at	CF512345	hypothetical protein LOC100248974	-	9e-1	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.03	3e-1	34	Zea mays	Zm.6615.1.A1_at	AI629740	hypothetical protein LOC100274676	-	6e-3	At3g24440	VRN5 (VERNALIZATION 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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