Gene omics information

Query gene ID	TaAffx.38420.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.1	TaAffx.38420.1.S1_at	BJ233527	-	-	3e-1	At1g51960	IQD27 (IQ-domain 27)	S.X.	H.G.	Please select
0.44	64.5	Ta.7011.2.S1_a_at	CA636224	-	-	1e-9	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	S.X.	H.G.	Please select
0.44	64.5	Ta.21114.2.S1_at	BG604841	-	-	4e-47	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	S.X.	H.G.	Please select
0.43	62.2	Ta.14705.3.S1_a_at	CA677338	-	-	4e+0	At3g05500	rubber elongation factor (REF) family protein	S.X.	H.G.	Please select
0.39	56.1	Ta.1348.3.S1_a_at	CA662224	-	-	1e-12	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	S.X.	H.G.	Please select
0.37	53.0	TaAffx.116915.1.S1_s_at	CA612667	-	-	2e+0	At1g25420	unknown protein	S.X.	H.G.	Please select
0.36	51.9	Ta.7299.2.S1_a_at	CA605243	-	-	5e-12	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.35	49.8	Ta.5581.3.S1_at	BJ232695	-	-	1e-5	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.33	46.9	Ta.7422.3.S1_a_at	CA593775	-	-	6e-5	At5g20520	WAV2 (WAVY GROWTH 2)	S.X.	H.G.	Please select
0.31	42.7	TaAffx.121937.1.S1_at	BG263835	-	-	5e-9	At1g79090	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.3	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.4	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.6	97.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-7	56	Ta.5547.1.A1_at	BJ285132	-	-	1e-1	At5g27400	unknown protein	C.G.	S.X.	Please select
0.14	7e-5	48	Ta.10379.2.S1_at	BJ245209	-	-	2e-5	At5g54780	RAB GTPase activator	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.2925.1.S1_x_at	BJ277030	-	-	3e-15	At4g11820	MVA1	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.2925.1.S1_s_at	BJ277030	-	-	3e-15	At4g11820	MVA1	C.G.	S.X.	Please select
0.06	7e-2	38	TaAffx.84884.1.S1_at	CA627487	-	-	2e+0	At5g38770	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.20520.1.S1_at	CA637265	-	-	3e-3	At3g62970	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.119986.1.S1_at	BJ249181	-	-	3e-1	At4g16240	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.113250.1.S1_at	CA616936	-	-	3e-1	At4g39403	PLS (POLARIS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Arabidopsis thaliana	At1g51960	841624	IQD27 (IQ-domain 27)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.67262.1.S1_s_at	BE583903	-	-	1e+1	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please select
0.41	2e-163	573	Hordeum vulgare	Contig7772_at	Contig7772	-	-	2e-7	At4g27100	RAB GTPase activator	C.G.	S.X.	Please select
0.25	2e-12	73	Oryza sativa	Os11g0587500	AK065976.1	-	RabGAP/TBC domain containing protein	4e-6	At4g27100	RAB GTPase activator	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Populus trichocarpa	Ptp.8049.1.S1_at	BU886936	hypothetical protein	-	5e+0	At5g50110	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1620098_at	CF404070	-	-	8e-1	At4g33110	coclaurine N-methyltransferase, putative	C.G.	S.X.	Please select
0.04	7e-3	40	Zea mays	Zm.3852.1.S1_at	CD998914	TBC domain containing protein	-	5e-12	At5g54780	RAB GTPase activator	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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