Gene omics information

Query gene ID	TaAffx.38268.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	S.X.	H.G.	Please select
0.63	83.1	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	S.X.	H.G.	Please select
0.56	78.6	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.34241.2.S1_x_at	CA722326	-	-	4e+0	At5g51960	-	S.X.	H.G.	Please select
0.50	72.4	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	S.X.	H.G.	Please select
0.36	51.9	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	S.X.	H.G.	Please select
0.34	48.1	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	S.X.	H.G.	Please select
0.33	46.9	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.7	99.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
12.7	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
11.7	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
3.0	94.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-48	192	TaAffx.92516.1.A1_at	BJ261411	-	-	4e+0	At3g50695	unknown protein	C.G.	S.X.	Please select
0.08	8e-8	57	TaAffx.57087.1.S1_at	CA636868	-	-	1e+1	At5g60964	-	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.65814.1.A1_at	BJ220196	-	-	2e+0	At4g33480	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.12040.1.S1_at	BJ307994	-	-	2e+0	At3g07580	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.81263.1.S1_at	CA687961	-	-	4e+0	At2g33440	splicing factor family protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.70646.1.S1_at	BQ802342	-	-	7e-1	At4g19200	proline-rich family protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.114162.1.S1_at	CA597636	-	-	3e-1	At1g19320	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.862.1.A1_at	BG906352	-	-	1e+1	At5g38050	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	Ta.13882.1.S1_at	AL830862	-	-	3e+0	At3g58070	GIS (GLABROUS INFLORESCENCE STEMS)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g21326	838731	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.77562.1.S1_at	BM522902	-	-	3e+0	At5g09920	NRPB4	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HVSMEb0012O04f_at	HVSMEb0012O04f	-	-	1e-1	At2g40580	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	OsAffx.10786.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.215984.1.S1_x_at	pmrna30480	hypothetical protein	-	3e-1	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1613169_at	CB971872	hypothetical protein LOC100252662	-	4e+0	At5g55330	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	ZmAffx.472.1.A1_at	AI677496	hypothetical protein LOC100193335	-	2e-1	At1g09660	KH domain-containing quaking protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage