Gene omics information

Query gene ID	TaAffx.38217.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.38217.1.S1_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	S.X.	H.G.	Please select
0.77	90.8	TaAffx.107754.1.S1_at	CD876350	-	-	1e+0	At2g21780	unknown protein	S.X.	H.G.	Please select
0.71	88.0	TaAffx.77881.1.S1_at	CA741326	-	-	2e+1	Atcg00065	-	S.X.	H.G.	Please select
0.55	76.8	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.30411.1.S1_at	CK209297	-	-	5e+0	At5g62280	unknown protein	S.X.	H.G.	Please select
0.38	54.7	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.3	99.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
18.2	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.5	99.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.2	99.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.5	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	6e-124	442	TaAffx.38217.1.S1_x_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	C.G.	S.X.	Please select
0.20	3e-11	67	TaAffx.121182.1.S1_at	CA682749	-	-	9e-1	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	C.G.	S.X.	Please select
0.04	5e-1	34	TaAffx.5825.1.S1_at	CA697748	-	-	3e-1	At2g41400	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	TaAffx.79725.1.S1_s_at	CA709777	-	-	4e+0	At5g40981	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	TaAffx.55812.1.S1_at	CA660942	-	-	4e+0	At1g01350	nucleic acid binding / protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	2e+0	32	Ta.7543.1.S1_at	CK215504	-	-	3e-1	At3g63060	EDL3 (EID1-like 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Ta.7255.1.S1_at	CD452491	-	-	2e-27	At1g65430	zinc finger protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Ta.23848.3.S1_at	BJ281751	-	-	9e-2	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	C.G.	S.X.	Please select
0.04	7e+0	30	TaAffx.56193.1.S1_at	CA656019	-	-	2e+1	At5g48540	33 kDa secretory protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e+0	30	Arabidopsis thaliana	At5g11690	831041	ATTIM17-3	mitochondrial inner membrane translocase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	34	Glycine max	GmaAffx.74755.1.S1_at	CA785766	-	-	8e-1	At1g78260	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	3e+0	30	Hordeum vulgare	Contig23176_at	Contig23176	-	-	9e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.03	9e-1	34	Oryza sativa	Os03g0603100	9631.m03906	-	Cytochrome P-450	2e+0	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Populus trichocarpa	PtpAffx.224618.1.S1_at	pmrna43324	hypothetical protein	-	9e-1	At4g19400	actin binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	30	Vitis vinifera	1611608_at	BQ794539	-	-	8e-2	At3g54085	-	C.G.	S.X.	Please select
0.05	3e+0	30	Zea mays	ZmAffx.297.1.A1_at	AI670430	-	-	3e+0	At1g38950	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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