Gene omics information

Query gene ID	TaAffx.37703.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.37703.1.S1_at	BJ268324	-	-	1e+1	At5g59990	-	S.X.	H.G.	Please select
0.61	82.0	TaAffx.66590.1.A1_at	BG909262	-	-	1e+1	At4g21440	ATMYB102 (ARABIDOPSIS MYB-LIKE 102)	S.X.	H.G.	Please select
0.61	82.0	TaAffx.78855.1.S1_at	CA725651	-	-	5e-2	At1g49930	-	S.X.	H.G.	Please select
0.60	81.0	TaAffx.57685.1.S1_at	CA621422	-	-	2e+1	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	S.X.	H.G.	Please select
0.59	79.8	TaAffx.119601.1.S1_at	BJ266980	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	S.X.	H.G.	Please select
0.51	73.0	TaAffx.80426.1.S1_at	CA600418	-	-	4e-1	At2g12935	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.117156.3.S1_at	CA709106	-	-	9e-1	At5g48575	unknown protein	S.X.	H.G.	Please select
0.48	69.0	TaAffx.79010.1.S1_at	CA723804	-	-	3e+0	At4g31470	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.45	65.2	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	S.X.	H.G.	Please select
0.42	60.9	TaAffx.117373.1.S1_at	BQ605838	-	-	1e+0	At3g10400	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.8	99.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9	99.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.6	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM138172	genotype DH95 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-30	133	TaAffx.12105.1.A1_at	BJ294207	-	-	2e-1	At5g04280	glycine-rich RNA-binding protein	C.G.	S.X.	Please select
0.05	2e-2	40	TaAffx.52983.1.S1_at	CA698114	-	-	4e+0	At5g23840	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.87256.1.S1_at	CA593304	-	-	2e+1	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.405.1.A1_at	CD492196	-	-	2e-2	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.31243.1.S1_at	CA618220	-	-	4e+0	At4g20325	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.30289.1.S1_at	CA626451	-	-	9e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.5373.1.S1_at	CA663806	-	-	5e-1	At5g04760	myb family transcription factor	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.21633.1.S1_a_at	CA697502	-	-	2e-1	At2g25670	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.14449.1.S1_at	BJ250245	-	-	9e-2	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g59990	836121	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	PsAffx.C3000200_at	PsAffx.C3000200	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	Contig19227_at	Contig19227	-	-	1e+0	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os06g0121400	9634.m00213	-	-	7e-2	At5g67510	60S ribosomal protein L26 (RPL26B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.46447.1.S1_at	CF228064	histone deacetylase complex protein	-	2e-15	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1616708_at	CB836421	-	-	5e+0	At2g22241	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.764.1.A1_at	AI746075	hypothetical protein LOC100191363	-	3e+0	At2g31215	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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