Gene omics information

Query gene ID	TaAffx.37139.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.37139.1.S1_at	CD897160	-	-	2e-3	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	S.X.	H.G.	Please select
0.91	98.2	Ta.24114.12.S1_x_at	BJ242193	-	-	1e+0	At5g10520	RBK1 (Rop Binding protein Kinases 1)	S.X.	H.G.	Please select
0.87	94.2	Ta.28312.1.S1_x_at	BJ241990	triticin	-	7e-2	At3g19360	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.85	93.8	Ta.9799.1.S1_at	BQ805009	-	-	3e-1	At3g60440	-	S.X.	H.G.	Please select
0.83	93.4	Ta.13254.1.S1_x_at	BJ240159	HMW glutenin	-	1e+0	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	S.X.	H.G.	Please select
0.80	92.2	Ta.1314.1.S1_at	Y11485.1	serpin 1	-	3e+0	At2g25240	serine-type endopeptidase inhibitor	S.X.	H.G.	Please select
0.80	92.2	Ta.28312.1.S1_at	BJ241990	triticin	-	7e-2	At3g19360	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.73	89.1	Ta.1314.1.S1_s_at	Y11485.1	serpin 1 /// serpin /// serpin	-	3e+0	At2g25240	serine-type endopeptidase inhibitor	S.X.	H.G.	Please select
0.71	88.0	Ta.1308.1.S1_at	CD918842	beta purothionin precursor	-	1e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	S.X.	H.G.	Please select
0.65	83.9	Ta.28632.1.S1_x_at	M16060.1	gamma-gliadin	-	3e-2	At1g18750	AGL65 (AGAMOUS-LIKE 65)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
133.3	100.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
120.5	100.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
113.8	100.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
0.0	30.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
0.0	30.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
0.0	30.7	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
0.0	30.7	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
0.0	30.7	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
0.0	30.7	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
0.0	30.7	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-40	167	TaAffx.11509.1.S1_at	CD904811	-	-	1e-8	At5g18270	ANAC087	C.G.	S.X.	Please select
0.30	2e-28	127	Ta.25258.1.S1_at	CD908196	-	-	4e-21	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select
0.32	1e-19	97	TaAffx.117376.1.S1_at	BQ605728	-	-	1e-15	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select
0.21	2e-15	83	TaAffx.117676.1.S1_at	CA734178	-	-	2e-2	At5g18270	ANAC087	C.G.	S.X.	Please select
0.15	2e-9	63	Ta.10826.1.A1_a_at	BQ166646	-	-	2e+0	At5g14970	unknown protein	C.G.	S.X.	Please select
0.08	3e-5	50	Ta.25611.1.S1_at	CD373727	-	-	6e-5	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select
0.09	3e-5	50	Ta.10826.2.A1_x_at	BQ167199	-	-	5e+0	Atmg00270	-	C.G.	S.X.	Please select
0.04	4e-4	46	TaAffx.82954.1.S1_at	CA664418	-	-	3e-10	At1g01720	ATAF1	C.G.	S.X.	Please select
0.04	4e-4	46	TaAffx.30204.1.S1_at	CA627153	-	-	3e-7	At1g01720	ATAF1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-3	44	Arabidopsis thaliana	At1g76420	843975	CUC3 (CUP SHAPED COTYLEDON3)	Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	9e-3	42	Glycine max	Gma.895.2.S1_at	AW164361	-	-	3e-10	At3g29035	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	C.G.	S.X.	Please select
0.32	7e-23	107	Hordeum vulgare	Contig9284_at	Contig9284	-	-	3e-18	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select
0.19	5e-8	59	Oryza sativa	Os06g0344900	9634.m02331	-	No apical meristem (NAM) protein family protein	1e-3	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	4e-5	50	Populus trichocarpa	PtpAffx.210432.1.S1_at	pmrna20485	NAC domain protein, IPR003441	-	6e-42	At3g18400	anac058 (Arabidopsis NAC domain containing protein 58)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	8e-3	40	Vitis vinifera	1620507_at	CB979490	hypothetical protein LOC100242836	-	1e-19	At5g04410	NAC2	C.G.	S.X.	Please select
0.12	3e-18	91	Zea mays	Zm.5914.1.A1_at	CA402103	nac4 protein	-	4e-12	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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