Gene omics information

Query gene ID	TaAffx.32308.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.8	TaAffx.32308.1.S1_at	CA597142	-	-	1e+0	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	S.X.	H.G.	Please select
0.73	89.1	Ta.9629.2.S1_a_at	BJ303172	-	-	4e+0	At5g52740	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.115727.1.S1_at	BJ314247	-	-	4e+0	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	S.X.	H.G.	Please select
0.57	79.2	TaAffx.111296.1.S1_s_at	CA644002	-	-	9e-1	At2g01060	myb family transcription factor	S.X.	H.G.	Please select
0.42	60.9	Ta.21114.2.S1_at	BG604841	-	-	4e-47	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	S.X.	H.G.	Please select
0.36	51.9	Ta.5581.3.S1_at	BJ232695	-	-	1e-5	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250885	TcLr1_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	Ta.607.1.S1_a_at	CK200298	-	-	1e-7	At5g08565	positive transcription elongation factor/ zinc ion binding	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.607.1.S1_x_at	CK200298	-	-	1e-7	At5g08565	positive transcription elongation factor/ zinc ion binding	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.607.1.S1_at	CK200298	-	-	1e-7	At5g08565	positive transcription elongation factor/ zinc ion binding	C.G.	S.X.	Please select
0.04	3e-1	36	Ta.18244.1.A1_at	CA632323	-	-	3e-1	At2g26450	pectinesterase family protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.64922.1.S1_at	BJ269782	-	-	1e+0	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.12595.1.S1_at	BJ250600	-	-	1e-39	At3g10270	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.9390.2.S1_at	CA605082	-	-	5e-1	At4g24310	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.6875.2.S1_at	BJ305298	-	-	1e+0	At4g05030	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.86006.1.S1_at	CA623940	-	-	1e-3	At4g24220	VEP1 (VEIN PATTERNING 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psMA010xK23f_at	PsAffx.psMA010xK23f	-	-	1e+1	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	Contig23446_at	Contig23446	-	-	3e+0	At5g08391	unknown protein	C.G.	S.X.	Please select
0.33	4e-122	438	Oryza sativa	Os03g0363900	AK066313.1	-	Zn-finger, DHHC type domain containing protein	2e-4	At3g04970	zinc finger (DHHC type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-3	44	Populus trichocarpa	PtpAffx.222747.1.S1_at	pmrna40370	hypothetical protein	-	2e-31	At3g04970	zinc finger (DHHC type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	C.G.	S.X.	Please select
0.05	2e+0	32	Zea mays	Zm.9617.1.A1_at	BM337585	-	-	5e+0	At4g26670	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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