Gene omics information

Query gene ID	TaAffx.31777.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.31777.1.S1_at	CA607826	-	-	3e-1	At5g28610	-	S.X.	H.G.	Please select
0.16	18.2	TaAffx.31260.1.S1_at	CA618085	-	-	5e-6	At5g02870	60S ribosomal protein L4/L1 (RPL4D)	S.X.	H.G.	Please select
0.13	14.6	Ta.7193.3.S1_at	CA718160	-	-	1e+1	At5g08400	unknown protein	S.X.	H.G.	Please select
0.12	13.3	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	S.X.	H.G.	Please select
0.12	13.3	TaAffx.90026.1.S1_at	BQ609544	-	-	3e-1	At3g20830	protein kinase family protein	S.X.	H.G.	Please select
0.07	8.6	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.5	99.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.0	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.8	99.1	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.2	99.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.0	99.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.0	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4	98.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-24	113	Ta.30888.1.S1_at	CN011455	-	-	1e+0	At1g05920	DNA binding	C.G.	S.X.	Please select
0.08	2e-8	59	Ta.12952.2.S1_at	BJ301975	-	-	3e-1	At4g01940	NFU1	C.G.	S.X.	Please select
0.24	3e-4	46	TaAffx.79405.1.S1_at	CA716519	-	-	3e+0	At3g20993	LCR56 (Low-molecular-weight cysteine-rich 56)	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.119146.1.S1_at	BJ287408	-	-	2e+0	At4g39710	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.118927.1.S1_at	BJ302126	-	-	1e+0	At5g58412	-	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.5486.1.A1_a_at	BQ169987	-	-	5e+0	At5g28610	-	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.26822.1.A1_at	CD491337	-	-	2e-8	At4g27700	rhodanese-like domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Ta.7238.1.S1_at	CK169511	-	-	7e-1	At3g24440	VRN5 (VERNALIZATION 5)	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.5540.2.S1_x_at	BJ280081	-	-	3e-1	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.psHA003iE02r_s_at	PsAffx.psHA003iE02r	-	-	7e-5	At4g14465	DNA-binding protein-related	C.G.	S.X.	Please select
0.37	1e-54	212	Hordeum vulgare	Contig20257_at	Contig20257	-	-	3e-1	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.05	9e-3	42	Oryza sativa	Os10g0465900	AK110879.1	-	Conserved hypothetical protein	1e+1	At5g08565	positive transcription elongation factor/ zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.1860.1.A1_at	CK093687	hypothetical protein	-	1e-10	At3g18800	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1607454_at	CF211439	similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter	-	7e-11	At1g01790	KEA1 (K EFFLUX ANTIPORTER 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.523.1.A1_at	AI711675	-	-	3e+0	At3g54363	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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