Gene omics information

Query gene ID	TaAffx.31313.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.111296.1.S1_x_at	CA644002	-	-	9e-1	At2g01060	myb family transcription factor	S.X.	H.G.	Please select
0.40	58.4	TaAffx.131315.1.S1_at	BJ278064	-	-	2e-5	At4g09810	transporter-related	S.X.	H.G.	Please select
0.32	44.4	Ta.7714.3.S1_x_at	CA638977	-	-	1e+0	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	S.X.	H.G.	Please select
0.29	39.2	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	S.X.	H.G.	Please select
0.15	17.1	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.0	99.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	8e-63	240	Ta.2495.1.S1_at	BJ297930	-	-	7e-7	At3g58180	PBS lyase HEAT-like repeat-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.122147.1.S1_at	CA637033	-	-	1e-1	At5g36080	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	TaAffx.122320.1.S1_at	BQ620251	-	-	2e-8	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.11828.1.A1_at	BJ322027	-	-	2e-1	At5g22170	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.117375.1.S1_at	BQ605802	-	-	4e+0	At2g46210	delta-8 sphingolipid desaturase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.3249.3.A1_at	CK211276	-	-	1e-22	At1g29920	CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.24161.1.A1_at	CK152459	-	-	4e-5	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.207.1.S1_at	AF031194.1	S276 protein	-	2e-2	At2g46210	delta-8 sphingolipid desaturase, putative	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.94517.1.S1_at	BJ243990	-	-	4e-2	At1g75550	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At3g52561	6241261	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psZG009xA07f_at	PsAffx.psZG009xA07f	-	-	8e-1	At2g17950	WUS (WUSCHEL)	C.G.	S.X.	Please select
0.02	5e-1	34	Hordeum vulgare	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.23	1e-60	234	Oryza sativa	Os12g0626100	AK059924.1	-	ARM repeat fold domain containing protein	3e-6	At3g58180	PBS lyase HEAT-like repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	9e-5	48	Populus trichocarpa	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	34	Vitis vinifera	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8600.1.A1_at	AY107085.1	-	-	6e-2	At5g52200	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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