Gene omics information

Query gene ID TaAffx.30652.1.S1_at
Gene name
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7589.8TaAffx.30652.1.S1_atCA623146--3e-4At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)S.X.H.G.
0.6483.6Ta.18034.1.S1_atCA627515--1e-2At5g62900unknown proteinS.X.H.G.
0.4362.2Ta.20799.1.S1_atCA487003--3e-1At3g48140senescence-associated protein, putativeS.X.H.G.
0.3854.7TaAffx.112158.1.S1_x_atCA626538--2e+1At3g28590unknown proteinS.X.H.G.
0.3753.0Ta.26670.1.A1_atCD491523--9e-20At4g26850VTC2 (vitamin c defective 2)S.X.H.G.
0.3753.0TaAffx.29037.1.S1_atCA651806--1e+1At3g48185unknown proteinS.X.H.G.
0.3753.0TaAffx.64591.1.S1_atBJ288225--1e+0At1g19010unknown proteinS.X.H.G.
0.3549.8Ta.9084.3.S1_atCA666296--1e+1At5g50050invertase/pectin methylesterase inhibitor family proteinS.X.H.G.
0.3549.8TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinS.X.H.G.
0.3448.1TaAffx.93677.1.S1_atBG906767--3e+0At5g19473-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.299.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
8.798.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
7.798.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
4.897.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.596.9GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
4.296.6GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
4.296.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.196.4GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
4.096.3GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
3.795.8GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.222e-39163Ta.9408.1.S1_atBJ309615--2e-4At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.047e-548Ta.5442.1.S1_atCK193982--2e-3At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)C.G.S.X.
0.023e-446TaAffx.129082.1.S1_x_atCK154420--3e-6At5g64460-C.G.S.X.
0.031e-344TaAffx.38492.1.S1_atBJ228093--2e+0At5g19910SOH1 family proteinC.G.S.X.
0.045e-342TaAffx.52035.1.S1_atCA714343--1e-2At5g61412unknown proteinC.G.S.X.
0.045e-342TaAffx.110693.2.S1_atCA655890--7e-2At1g61255-C.G.S.X.
0.035e-342Ta.9251.2.A1_x_atCA606965--3e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
0.035e-342Ta.9251.2.A1_atCA606965--3e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
0.052e-240TaAffx.9551.1.S1_atCA595241--1e+0At2g36410unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-446Arabidopsis thalianaAt2g30260817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.---C.G.S.X.
0.151e-757Glycine maxGmaAffx.58650.1.S1_atBE021790--3e-28At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.282e-31135Hordeum vulgareContig7570_atContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.193e-39163Oryza sativaOs.12051.1.S1_at---0C.G.S.X.
0.083e-1479Populus trichocarpaPtpAffx.9494.1.S1_atDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.068e-546Vitis vinifera1621155_atBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.302e-89327Zea maysZm.16475.2.S1_atCK371021--2e-7At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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