CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.28416.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.4 TaAffx.28416.1.S1_at CA660436 - - 4e+0 At3g09500 60S ribosomal protein L35 (RPL35A) S.X. H.G.
0.53 74.9 TaAffx.106082.1.S1_at CA725012 - - 3e-1 At1g07220 - S.X. H.G.
0.46 66.8 AFFX-Tae-r2-Bs-dap-M_at AFFX-Tae-r2-Bs-dap-M - - 0 S.X. H.G.
0.23 29.0 Ta.8275.2.S1_a_at CA723726 - - 1e+1 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.16 18.2 AFFX-Tae-r2-Bs-lys-3_at AFFX-Tae-r2-Bs-lys-3 - - 0 S.X. H.G.
0.10 11.3 Ta.9296.2.S1_a_at AJ251798.1 - - 3e+0 At4g13240 ROPGEF9 S.X. H.G.
0.10 11.3 TaAffx.123490.1.S1_s_at CA633308 - - 5e-1 At5g17290 APG5 (AUTOPHAGY 5) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.3 GSM111193 genotype F38a developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
9.3 99.0 GSM111236 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
8.2 98.8 GSM111228 genotype B65 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.2 98.5 GSM138144 Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
6.1 98.1 GSM111145 genotype RL4452 developing seed at 5 days after anthesis, biological rep1 GSE4929 wheat expression level polymorphism study parental genotypes 2 biological reps
5.6 97.8 GSM111249 genotype F87 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.5 97.8 GSM138170 genotype C31 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.6 97.0 GSM111194 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.5 96.9 GSM138182 genotype A10 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5 96.9 GSM111186 genotype B68 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 42 Ta.7062.1.S1_at BQ237599 - - 6e-2 At5g41680 protein kinase family protein C.G. S.X.
0.02 7e-2 38 TaAffx.19998.1.A1_at CD867474 - - 3e+0 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.03 7e-2 38 Ta.9845.1.S1_at BJ238885 - - 2e-1 At5g38590 F-box family protein C.G. S.X.
0.03 7e-2 38 Ta.9845.1.S1_a_at BJ238885 - - 2e-1 At5g38590 F-box family protein C.G. S.X.
0.06 3e-1 36 TaAffx.8491.1.S1_at CA624450 - - 2e+1 At5g28463 unknown protein C.G. S.X.
0.06 3e-1 36 TaAffx.8491.1.S1_x_at CA624450 - - 2e+1 At5g28463 unknown protein C.G. S.X.
0.04 3e-1 36 Ta.6745.1.S1_at CD872209 - - 1e-7 At2g36570 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 1e+0 34 TaAffx.92123.1.S1_at BJ279960 - - 1e+0 At5g46430 60S ribosomal protein L32 (RPL32B) C.G. S.X.
0.02 1e+0 34 TaAffx.877.1.S1_at CK205808 - - 3e+0 At5g60460 sec61beta family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At3g09500 820107 60S ribosomal protein L35 (RPL35A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFP - - - C.G. S.X.
0.04 6e+0 32 Glycine max PsAffx.psML008xM06f_s_at PsAffx.psML008xM06f - - 9e+0 At5g12880 proline-rich family protein C.G. S.X.
0.04 2e-9 61 Hordeum vulgare Contig11293_at Contig11293 - - 9e-3 At1g48480 RKL1 C.G. S.X.
0.19 2e-28 127 Oryza sativa Os05g0588300 AK060360.1 - Protein kinase domain containing protein 2e+0 At1g53620 unknown protein C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.218586.1.S1_at pmrna34253 hypothetical protein - 1e+1 At4g00650 FRI (FRIGIDA) C.G. S.X.
0.05 5e+0 30 Vitis vinifera 1620168_at CF202067.1 - - 2e+0 At1g30460 CPSF30 C.G. S.X.
0.10 1e-1 36 Zea mays Zm.1188.1.A1_at BE512438 - - 6e-1 At3g08680 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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