CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.28401.2.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.28401.2.S1_at CA660599 - - 9e-1 At3g21580 cobalt ion transmembrane transporter S.X. H.G.
0.19 22.4 Ta.11296.3.S1_x_at CA659571 - - 1e+0 At1g77200 AP2 domain-containing transcription factor TINY, putative S.X. H.G.
0.16 18.2 TaAffx.37703.1.S1_at BJ268324 - - 1e+1 At5g59990 - S.X. H.G.
0.10 11.3 TaAffx.57082.1.S1_at CA637040 - - 4e+0 At5g55508 unknown protein S.X. H.G.
0.06 7.6 TaAffx.105451.1.S1_at CA734135 - - 1e+0 At3g06730 thioredoxin family protein S.X. H.G.
0.04 5.8 TaAffx.119601.1.S1_at BJ266980 - - 9e+0 At5g59950 RNA and export factor-binding protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.1 99.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
24.8 99.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.0 99.5 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM138203 genotype F44 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.0 98.0 GSM111198 genotype A77 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.5 97.8 GSM143513 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3 97.6 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM298054 Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM111224 genotype A81 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2 96.6 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 9e-69 260 TaAffx.28401.1.S1_at CA681922 - - 7e+0 At3g31350 unknown protein C.G. S.X.
0.09 8e-23 107 Ta.23704.1.S1_x_at AJ440795.1 Glutathione transferase - 3e+0 At2g16575 unknown protein C.G. S.X.
0.09 8e-23 107 Ta.23704.1.S1_s_at AJ440795.1 Glutathione transferase /// Glutathione-S-transferase 19E50 - 3e+0 At2g16575 unknown protein C.G. S.X.
0.09 5e-18 91 Ta.27096.1.S1_at CK196245 - - 2e+0 At2g16575 unknown protein C.G. S.X.
0.10 5e-18 91 Ta.24150.1.S1_at AY064481.1 glutathione-S-transferase 19E50 - 2e+0 At2g16575 unknown protein C.G. S.X.
0.15 5e-15 81 TaAffx.108452.1.S1_at CA688209 Glutathione transferase - 1e-2 At1g57765 unknown protein C.G. S.X.
0.14 7e-11 67 TaAffx.109595.1.S1_at CA688712 - - 1e+1 At1g62333 unknown protein C.G. S.X.
0.08 7e-11 67 Ta.303.3.S1_x_at AJ610447 - - 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.08 7e-11 67 Ta.303.3.S1_at AJ610447 - - 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At3g21580 821712 cobalt ion transmembrane transporter F:cobalt ion transmembrane transporter activity;P:cobalt ion transport, cobalamin biosynthetic process;C:chloroplast;BOPA - - - C.G. S.X.
0.04 1e+0 34 Glycine max HgAffx.17626.1.S1_at CB278764 - - 9e-1 At5g25090 plastocyanin-like domain-containing protein C.G. S.X.
0.22 1e-72 272 Hordeum vulgare Contig21026_at Contig21026 - - 2e+0 At2g30870 GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) C.G. S.X.
0.21 3e-30 133 Oryza sativa Os01g0371400 NM_193841.1 - Glutathione S-transferase, C-terminal domaincontaining protein 5e-3 At3g62760 ATGSTF13 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.88672.1.A1_at CV256993 - - 6e-1 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1620556_at CF208984 hypothetical protein LOC100261914 - 4e+0 At5g63150 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.8571.1.A1_at BM348144 hypothetical protein LOC100276153 - 1e-3 At4g18205 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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