Gene omics information

Query gene ID	TaAffx.28146.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.2	TaAffx.28146.1.S1_at	CA664568	-	-	2e+1	At3g12345	unknown protein	S.X.	H.G.	Please select
0.82	92.7	TaAffx.15154.2.S1_s_at	CA744371	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	S.X.	H.G.	Please select
0.80	92.2	Ta.6692.2.A1_at	CA678021	-	-	1e-6	At4g36960	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.75	89.8	Ta.13274.2.A1_at	CA613778	-	-	7e-2	At5g05360	unknown protein	S.X.	H.G.	Please select
0.75	89.8	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	S.X.	H.G.	Please select
0.70	87.2	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	S.X.	H.G.	Please select
0.64	83.6	Ta.11430.1.S1_at	CA637362	-	-	4e+0	At4g39860	unknown protein	S.X.	H.G.	Please select
0.52	73.7	Ta.3378.2.A1_at	CA666300	-	-	2e-1	At5g12390	FIS1B (FISSION 1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.6	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
11.0	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.7	97.1	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-105	383	Ta.28880.1.S1_x_at	CD863485	-	-	1e-3	At3g48760	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.33	1e-105	383	Ta.28880.1.S1_at	CD863485	-	-	1e-3	At3g48760	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.27	7e-39	161	Ta.28880.2.S1_a_at	CA640553	-	-	3e-1	At3g47070	unknown protein	C.G.	S.X.	Please select
0.27	7e-39	161	Ta.28880.2.S1_at	CA640553	-	-	3e-1	At3g47070	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.6336.1.S1_at	BJ302422	-	-	1e+0	At2g36210	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.21282.1.S1_at	CA671794	-	-	7e-2	At4g37940	AGL21	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.3886.1.S1_at	BJ254650	-	-	3e-1	At5g49050	-	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.10129.1.S1_at	CA648907	-	-	1e-4	At5g39510	SGR4 (SHOOT GRAVITROPSIM 4)	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.9177.1.S1_at	CD881549	-	-	2e+0	At1g54240	DNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At3g12345	3768848	unknown protein	F:unknown;P:unknown;C:chloroplast;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.93463.1.S1_at	CF809188	-	-	1e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.33	9e-114	408	Hordeum vulgare	Contig3847_at	Contig3847	-	-	4e-9	At3g26935	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os05g0128500	9633.m00305	-	-	2e+0	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.90746.1.A1_at	CK094582	-	-	1e+1	At3g02640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1612149_at	CB342099	-	-	4e+0	At5g18240	MYR1 (MYb-related protein 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.69.1.A1_at	AI665154	-	-	8e-1	Atcg01070	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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