Gene omics information

Query gene ID	TaAffx.27409.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.27409.1.S1_at	CA677175	-	-	4e+0	At1g02405	proline-rich family protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.105660.1.S1_at	CA731441	-	-	1e-3	At3g01015	-	S.X.	H.G.	Please select
0.56	78.6	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.56	78.6	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	S.X.	H.G.	Please select
0.54	75.5	TaAffx.113024.3.S1_at	CA618057	-	-	3e-1	At5g26700	germin-like protein, putative	S.X.	H.G.	Please select
0.49	69.7	TaAffx.6157.1.S1_at	CA690748	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.49	69.7	Ta.14468.2.S1_at	BJ267272	-	-	4e+0	At2g26120	glycine-rich protein	S.X.	H.G.	Please select
0.49	69.7	Ta.21581.1.S1_at	CA696527	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please select
0.47	67.9	TaAffx.110652.1.S1_at	CA656567	-	-	1e-2	At2g23690	unknown protein	S.X.	H.G.	Please select
0.42	60.9	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.0	99.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
25.8	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
17.2	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.0	99.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.2	99.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.7	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.6	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.9	99.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	38	TaAffx.80231.1.S1_at	CA699608	-	-	3e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.80220.1.S1_at	CA699737	-	-	1e+0	At2g40020	-	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.24880.1.S1_at	CA710595	-	-	9e-1	At4g04745	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.118969.1.S1_at	CA656249	-	-	7e-2	At5g03170	FLA11	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.9502.3.S1_at	CA630172	-	-	3e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.25516.1.S1_at	CD885585	-	-	2e-1	At5g39800	60S ribosomal protein-related	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.25516.1.S1_x_at	CD885585	-	-	2e-1	At5g39800	60S ribosomal protein-related	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.15373.1.S1_at	BJ258322	-	-	2e+0	At3g02410	-	C.G.	S.X.	Please select
0.05	3e-1	36	TaAffx.9300.1.S1_at	CA603805	-	-	2e+0	At5g17390	universal stress protein (USP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At1g02405	837769	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	Gma.13378.1.A1_at	CD395558	-	-	7e-1	At3g23210	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HT09F22u_s_at	HT09F22u	-	-	7e-1	At4g25720	QC (GLUTAMINYL CYCLASE)	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.30697.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.208985.1.S1_at	pmrna17805	hypothetical protein	-	1e-2	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e+0	30	Vitis vinifera	1619963_a_at	CD715008	hypothetical protein LOC100261868	-	1e-19	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.7596.1.A1_at	BM079087	hypothetical protein LOC100216955	-	6e+0	At5g42504	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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