Gene omics information

Query gene ID	TaAffx.25726.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.25726.1.S1_at	CA696753	-	-	2e+0	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.11	12.4	Ta.26462.1.A1_at	CD490934	-	-	7e+0	At5g58640	selenoprotein-related	S.X.	H.G.	Please select
0.08	9.4	TaAffx.108383.1.S1_at	CA688956	-	-	2e+0	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.03	4.7	TaAffx.112085.1.S1_at	CA627212	-	-	4e+0	At4g15710	unknown protein	S.X.	H.G.	Please select
0.02	3.6	TaAffx.51264.1.S1_at	CA728410	-	-	2e+0	At2g05370	-	S.X.	H.G.	Please select
0.02	3.6	TaAffx.30805.1.S1_at	CA621908	-	-	7e+0	At4g33310	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.2	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
21.3	99.7	GSM250892	TcLr1_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.6	99.7	GSM250893	TcLr34_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.3	99.6	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.2	99.5	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
12.3	99.4	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.6	99.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
10.2	99.2	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.9	99.1	GSM111174	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.4	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-10	63	Ta.5610.1.S1_at	AY151390.1	hemoglobin Hb1	-	2e+0	At3g06360	AGP27	C.G.	S.X.	Please select
0.03	5e-1	34	TaAffx.91760.1.S1_at	CA658140	-	-	6e+0	At5g20820	auxin-responsive protein-related	C.G.	S.X.	Please select
0.04	5e-1	34	TaAffx.55443.1.S1_at	CA666046	-	-	1e+1	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.01	2e+0	32	Ta.3509.1.S1_at	CK200929	-	-	4e-13	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	C.G.	S.X.	Please select
0.03	2e+0	32	Ta.21998.1.A1_x_at	CA665118	-	-	1e-1	At1g32190	-	C.G.	S.X.	Please select
0.03	2e+0	32	Ta.21998.1.A1_s_at	CA665118	-	-	1e-1	At1g32190	-	C.G.	S.X.	Please select
0.03	8e+0	30	TaAffx.92424.1.S1_at	CA695463	-	-	2e-3	At4g21800	QQT2 (quatre-quart2)	C.G.	S.X.	Please select
0.03	8e+0	30	TaAffx.36939.1.S1_at	BJ307592	-	-	2e+0	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	C.G.	S.X.	Please select
0.04	8e+0	30	TaAffx.27287.1.S1_s_at	CA678789	-	-	1e-3	At1g09430	ACLA-3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At3g05170	819681	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+1	30	Glycine max	PsAffx.C88000001_at	PsAffx.C88000001	-	-	9e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.12	4e-12	69	Hordeum vulgare	Contig3995_s_at	Contig3995	-	-	7e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.29	1e-83	309	Oryza sativa	Os03g0226200	U76031.1	-	Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)	8e+0	At5g02200	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e+0	32	Populus trichocarpa	PtpAffx.209228.1.S1_at	pmrna18242	hypothetical protein	-	1e+1	At5g47920	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-1	32	Vitis vinifera	1614355_at	CF604126	-	-	7e-8	At1g12050	fumarylacetoacetase, putative	C.G.	S.X.	Please select
0.07	3e-6	50	Zea mays	Zm.485.1.A1_at	AF236080.1	hemoglobin	-	1e-1	At5g42860	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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