Gene omics information

Query gene ID	TaAffx.24009.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.24009.1.S1_at	CA726741	-	-	1e+0	At5g02550	unknown protein	S.X.	H.G.	Please select
0.57	79.2	Ta.20299.1.S1_at	CA677654	-	-	1e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	S.X.	H.G.	Please select
0.14	15.8	Ta.22587.2.S1_at	CA630605	-	-	1e+0	At3g46320	histone H4	S.X.	H.G.	Please select
0.07	8.6	TaAffx.118867.1.S1_at	BJ304757	-	-	2e+0	At3g08990	yippee family protein	S.X.	H.G.	Please select
0.07	8.6	Ta.1160.2.S1_at	CA635399	-	-	1e+0	Atmg00490	-	S.X.	H.G.	Please select
0.04	5.8	TaAffx.128414.122.S1_at	CA655664	-	-	1e-65	Atmg00280	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
91.0	100.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
16.7	99.6	GSM250907	Tc_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.4	99.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.6	99.5	GSM246393	SB109_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
12.5	99.4	GSM143492	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.1	99.3	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
10.6	99.2	GSM246385	SB165_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
10.4	99.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM246396	SB57_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
8.2	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	44	TaAffx.108653.1.S1_at	CA685840	-	-	1e+1	At1g76300	SmD3 (snRNP core protein SmD3)	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.87000.1.S1_at	CA597481	-	-	4e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.59968.1.S1_at	CA593005	-	-	2e-1	At1g30475	-	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.14348.1.S1_at	CK164017	-	-	7e-1	At1g67780	-	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.117028.1.S1_s_at	BQ620804	-	-	4e+0	At1g35890	DNA binding	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.28468.2.S1_x_at	BJ301728	-	-	1e+0	At5g27440	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.28468.2.S1_s_at	BJ301728	-	-	1e+0	At5g27440	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.58420.1.S1_at	CA619761	-	-	3e+0	At3g05858	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.27224.1.S1_at	CA679541	-	-	1e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g02550	831052	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-2	40	Glycine max	GmaAffx.44976.1.S1_at	BF324978	-	-	3e-3	At2g43945	unknown protein	C.G.	S.X.	Please select
0.03	1e-4	46	Hordeum vulgare	Contig6315_s_at	Contig6315	-	-	3e-9	At2g34770	FAH1 (FATTY ACID HYDROXYLASE 1)	C.G.	S.X.	Please select
0.05	9e-3	42	Oryza sativa	OsAffx.781.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.221456.1.S1_at	pmrna38352	hypothetical protein	-	1e+0	At1g57610	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zea mays	Zm.972.1.A1_at	BE186797	hypothetical protein LOC100278676	-	2e+0	At4g04925	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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