Gene omics information

Query gene ID	TaAffx.23792.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.23792.1.S1_at	CA730390	-	-	2e-2	At4g33160	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.40	58.4	Ta.7559.2.S1_a_at	CA640276	-	-	4e+0	At5g42420	transporter-related	S.X.	H.G.	Please select
0.20	24.0	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	S.X.	H.G.	Please select
0.14	15.8	Ta.16602.2.S1_at	CA697920	-	-	1e+0	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	S.X.	H.G.	Please select
0.14	15.8	Ta.28757.1.S1_at	AJ612432	-	-	3e-10	At2g43970	La domain-containing protein	S.X.	H.G.	Please select
0.01	2.4	Ta.3227.2.S1_x_at	CK198384	alternative splicing regulator	-	1e-17	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM138157	genotype DH91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	38	TaAffx.8243.1.S1_at	CA629977	-	-	2e-1	At1g53680	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	C.G.	S.X.	Please select
0.02	3e-1	36	TaAffx.91772.2.S1_x_at	CA601998	-	-	2e-1	At1g44990	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.5542.1.S1_at	CA707528	-	-	1e+0	At3g09230	AtMYB1 (myb domain protein 1)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.16907.1.A1_at	CK214848	-	-	3e-1	At3g18800	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.121102.2.S1_at	CA697640	-	-	1e+0	At1g42480	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.4218.1.S1_at	BU607240	-	-	2e-4	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.129524.1.A1_at	CA712071	-	-	6e+0	At5g18090	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.120013.1.S1_at	BJ247669	-	-	1e+0	At1g16960	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Ta.28649.3.S1_x_at	BJ321003	-	-	8e-4	At4g19200	proline-rich family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Arabidopsis thaliana	At4g33160	829453	ubiquitin-protein ligase	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	PsAffx.C124000019_at	PsAffx.C124000019	-	-	3e-1	At5g49550	unknown protein	C.G.	S.X.	Please select
0.04	8e-3	40	Hordeum vulgare	Contig23023_at	Contig23023	-	-	7e-2	At4g35590	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.03	3e-2	40	Oryza sativa	Os04g0106000	AK111054.1	-	Plant invertase/pectin methylesterase inhibitordomain containing protein	5e+0	At3g45990	actin-depolymerizing factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.217773.1.S1_at	pmrna33170	hypothetical protein	-	1e+1	At4g16141	sequence-specific DNA binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	30	Vitis vinifera	1613950_at	CF414823	hypothetical protein LOC100255542	-	3e-9	At1g50660	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.27.1.A1_at	AI622299	Hypothetical protein LOC100191746	-	3e+0	At5g46350	WRKY8	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage