Gene omics information

Query gene ID	TaAffx.23406.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.6	TaAffx.23406.1.S1_at	CA735527	-	-	9e-4	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.67	86.3	TaAffx.28146.1.S1_at	CA664568	-	-	2e+1	At3g12345	unknown protein	S.X.	H.G.	Please select
0.63	83.1	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	S.X.	H.G.	Please select
0.63	83.1	Ta.6692.2.A1_at	CA678021	-	-	1e-6	At4g36960	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.59	79.8	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	S.X.	H.G.	Please select
0.57	79.2	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.84709.1.S1_at	CA630743	-	-	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
58.3	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
12.0	99.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
10.7	99.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
10.0	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	4e-117	420	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.40	1e-67	256	Ta.23107.3.S1_a_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.40	1e-67	256	Ta.23107.3.S1_x_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.12	7e-23	107	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.07	1e-15	83	Ta.12805.1.S1_at	BQ170525	-	-	2e+0	At5g64400	-	C.G.	S.X.	Please select
0.03	1e-9	63	TaAffx.128619.1.S1_at	CA651607	-	-	4e-3	At2g11005	glycine-rich protein	C.G.	S.X.	Please select
0.08	9e-7	54	TaAffx.105254.1.S1_at	CA739238	-	-	5e-1	At2g30985	unknown protein	C.G.	S.X.	Please select
0.07	9e-7	54	Ta.9922.2.S1_at	CA737893	-	-	2e-1	At4g15885	kinesin motor protein-related	C.G.	S.X.	Please select
0.05	4e-6	52	TaAffx.98378.1.S1_at	CA735372	-	-	7e-2	At2g37035	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	9e-4	44	Arabidopsis thaliana	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	8e-5	48	Glycine max	GmaAffx.89866.1.A1_x_at	CK605817	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.31	3e-63	240	Hordeum vulgare	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.12	9e-27	121	Oryza sativa	Os05g0461300	AK111917.1	-	Ras-related protein Rab-8A (Oncogene c-mel)	4e-48	At3g53610	ATRAB8	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	Ptp.2072.1.S1_at	CV227202	hypothetical protein	-	2e-78	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-5	46	Vitis vinifera	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.11	4e-13	73	Zea mays	Zm.2826.1.S1_at	BM333443	hypothetical protein LOC100192989	-	2e-62	At3g46060	ATRAB8A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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