Gene omics information

Query gene ID	TaAffx.20065.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	S.X.	H.G.	Please select
0.73	89.1	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	S.X.	H.G.	Please select
0.60	81.0	Ta.20706.1.S1_s_at	BQ838776	-	-	1e-11	At3g24740	-	S.X.	H.G.	Please select
0.60	81.0	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.55	76.8	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.40	58.4	Ta.28342.1.A1_at	CA721750	-	-	8e-2	At1g47970	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.9	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
29.8	99.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
23.0	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.9	98.7	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	36	TaAffx.112572.1.S1_at	CA622811	-	-	2e-1	At2g07728	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	TaAffx.108919.1.S1_at	CA681679	-	-	1e+0	At2g04305	magnesium transporter CorA-like protein-related	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.89491.1.S1_at	CA643715	-	-	2e-1	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.85198.1.S1_at	CA617060	-	-	2e+1	At4g35570	HMGB5 (HIGH MOBILITY GROUP B 5)	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.79383.1.S1_at	CA716967	-	-	6e-2	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.79062.1.S1_at	CA723254	-	-	1e+1	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+1	32	TaAffx.58080.1.S1_at	CA622549	-	-	3e-1	At5g55135	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.54622.1.S1_at	CA679194	-	-	4e-3	At4g24972	TPD1 (TAPETUM DETERMINANT 1)	C.G.	S.X.	Please select
0.01	1e+1	32	TaAffx.31511.1.S1_at	BJ284978	-	-	2e-6	At2g42670	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	38	Arabidopsis thaliana	At3g45970	823740	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.66161.3.S1_at	CA800612	-	-	3e+0	At5g45290	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.14	2e-33	143	Hordeum vulgare	Contig19857_at	Contig19857	-	-	6e-1	At5g13660	unknown protein	C.G.	S.X.	Please select
0.32	0	734	Oryza sativa	Os01g0873800	AK068140.1	-	TPR-like domain containing protein	2e-25	At1g35660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	34	Populus trichocarpa	PtpAffx.214016.1.S1_at	pmrna27299	hypothetical protein	-	3e-1	At5g20120	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e+0	32	Vitis vinifera	1621258_at	CB971625	hypothetical protein LOC100245237	-	1e-9	At1g15200	protein-protein interaction regulator family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.8675.2.A1_a_at	BQ293935	nicotiana lesion-inducing like	-	3e-1	At2g07728	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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