Gene omics information

Query gene ID	TaAffx.17013.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.17013.2.S1_x_at	CA730181	-	-	1e+0	At4g10250	ATHSP22.0	S.X.	H.G.	Please select
0.73	89.1	Ta.4736.1.A1_at	BJ275856	-	-	6e+0	At1g54230	DNA binding	S.X.	H.G.	Please select
0.60	81.0	Ta.4674.1.S1_s_at	BJ269896	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.53	74.9	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	S.X.	H.G.	Please select
0.50	72.4	Ta.20562.1.S1_at	BQ743969	-	-	6e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please select
0.44	64.5	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	99.5	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.0	99.3	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.9	99.0	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.1	98.8	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.7	98.7	GSM138175	genotype A81 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.2	98.5	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.0	98.5	GSM138199	genotype C22 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.8	98.4	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2	98.1	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.8	97.9	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-3	42	Ta.6070.1.S1_at	BT009284.1	-	-	7e-2	At5g56360	calmodulin-binding protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.13982.1.S1_at	BQ753248	-	-	2e+0	At3g57500	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.66.2.S1_at	CK205746	-	-	1e+0	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.66.1.S1_at	CA599272	-	-	1e+0	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.30934.1.S1_at	CA621010	-	-	2e-27	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.7952.1.A1_at	BQ161012	-	-	4e+0	At3g06590	transcription factor	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.20366.2.S1_x_at	CK216470	-	-	1e+0	At5g12390	FIS1B (FISSION 1B)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.1709.2.S1_a_at	CA611032	-	-	6e-57	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.1709.1.S1_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g10250	826616	ATHSP22.0	Columbia endomembrane-localized small heat shock protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	HgAffx.7429.1.S1_at	CB824782	-	-	3e-1	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HS04O06u_at	HS04O06u	-	-	1e-8	At5g66320	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.26	3e-33	143	Oryza sativa	Os06g0192800	AK070038.1	-	Zn-finger, RING domain containing protein	3e-3	At5g05280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.208221.1.S1_at	pmrna16362	-	-	1e+0	At1g63110	cell division cycle protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1609359_at	CA809344	-	-	1e-14	At1g17760	CSTF77	C.G.	S.X.	Please select
0.14	8e-6	50	Zea mays	Zm.5815.1.A1_at	CF243741	-	-	3e+0	At1g70949	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage