Gene omics information

Query gene ID	TaAffx.15675.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.8	TaAffx.15675.1.A1_at	CD490321	-	-	2e-13	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.29351.1.S1_s_at	CA644657	-	-	4e+0	At2g25700	ASK3 (ARABIDOPSIS SKP1-LIKE 3)	S.X.	H.G.	Please select
0.48	69.0	Ta.22563.1.S1_at	BJ214726	-	-	5e-2	At4g24220	VEP1 (VEIN PATTERNING 1)	S.X.	H.G.	Please select
0.42	60.9	Ta.3283.1.S1_at	BQ838672	-	-	2e-2	At2g01250	60S ribosomal protein L7 (RPL7B)	S.X.	H.G.	Please select
0.39	56.1	Ta.22563.1.S1_x_at	BJ214726	-	-	5e-2	At4g24220	VEP1 (VEIN PATTERNING 1)	S.X.	H.G.	Please select
0.30	40.9	Ta.1839.1.S1_at	CA603626	fasciclin-like protein FLA26	-	2e-4	At2g35860	FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)	S.X.	H.G.	Please select
0.30	40.9	Ta.1839.1.S1_x_at	CA603626	fasciclin-like protein FLA26	-	2e-4	At2g35860	FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)	S.X.	H.G.	Please select
0.29	39.2	Ta.3219.1.S1_at	CD939114	-	-	3e-5	At5g47870	unknown protein	S.X.	H.G.	Please select
0.22	27.1	Ta.13292.1.S1_s_at	CD373872	-	-	2e-2	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.4	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.7	97.9	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.4	97.7	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.9	97.3	GSM138213	genotype C10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM138190	genotype D39 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.3	96.7	GSM111226	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2	96.6	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.2	96.6	GSM111227	genotype F48 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM138182	genotype A10 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9	96.1	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-43	176	TaAffx.86939.1.S1_at	CA598527	-	-	4e-3	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.15	1e-26	121	TaAffx.79715.1.S1_at	CA710016	-	-	4e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.04	2e-9	63	TaAffx.78488.1.S1_at	CA731809	-	-	4e-3	At1g12630	DNA binding / transcription activator/ transcription factor	C.G.	S.X.	Please select
0.05	2e-9	63	Ta.28294.1.S1_x_at	BQ619841	-	-	6e-4	At1g46768	RAP2.1 (related to AP2 1)	C.G.	S.X.	Please select
0.06	9e-9	61	Ta.25843.1.A1_at	CD453611	CBFIVc-B14	-	1e-1	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	C.G.	S.X.	Please select
0.09	1e-7	57	TaAffx.16192.1.S1_at	BQ169008	-	-	1e-8	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select
0.09	2e-6	54	TaAffx.28024.1.S1_at	CA666313	TaCBF9	-	3e-4	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.07	2e-6	54	Ta.13471.1.S1_at	BJ269425	TaCBF5	-	4e-1	At5g40981	unknown protein	C.G.	S.X.	Please select
0.04	9e-6	52	Ta.10130.1.S1_at	CK198845	-	-	8e-1	At2g40220	ABI4 (ABA INSENSITIVE 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-13	77	Arabidopsis thaliana	At2g35700	818139	ERF38 (ERF FAMILY PROTEIN 38)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	9e-25	115	Glycine max	GmaAffx.85915.2.S1_at	BQ296170	-	-	6e-17	At1g77200	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.21	3e-65	248	Hordeum vulgare	Contig11552_at	Contig11552	-	-	1e-13	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.46	5e-89	329	Oryza sativa	Os04g0549700	AK107119.1	-	Dehydration responsive element binding protein 2F(DREB2F protein)	2e-16	At2g25820	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e-5	50	Populus trichocarpa	PtpAffx.147208.1.A1_at	CV243525	AP2/ERF domain-containing transcription factor	-	3e-2	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-4	46	Vitis vinifera	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	C.G.	S.X.	Please select
0.16	1e-61	236	Zea mays	Zm.9418.1.S1_at	AF493799.1	DREB-like protein	-	4e-2	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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