CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.133698.1.A1_s_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 TaAffx.133698.1.A1_s_at BJ296326 - - 1e+0 At2g43570 chitinase, putative S.X. H.G.
0.80 92.2 Ta.5839.1.S1_at BJ291864 - - 9e-2 At3g05675 protein binding S.X. H.G.
0.38 54.7 Ta.15268.1.S1_x_at M11075.1 alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287) - 3e+0 At5g53590 auxin-responsive family protein S.X. H.G.
0.19 22.4 Ta.5839.1.S1_x_at BJ291864 - - 9e-2 At3g05675 protein binding S.X. H.G.
0.13 14.6 Ta.23142.5.S1_x_at CD868513 low molecular weight glutenin - 4e-2 At2g30590 WRKY21 S.X. H.G.
0.08 9.4 Ta.27780.3.S1_x_at CD897313 - - 5e+0 At5g54740 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
131.5 100.0 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
122.1 100.0 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
111.4 100.0 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
2.9 94.0 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
0.1 39.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
0.0 30.7 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
0.0 30.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
0.0 30.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
0.0 30.7 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
0.0 30.7 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 0 751 Ta.23888.2.S1_x_at CD909855 - - 6e-1 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.57 0 668 Ta.23888.1.S1_at CD918473 - - 1e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.56 3e-161 567 Ta.5873.1.S1_x_at CD910379 - - 5e-1 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.56 2e-159 561 Ta.5873.2.S1_at CD902597 - - 5e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
0.42 4e-105 381 Ta.5873.3.S1_x_at CD904673 - - 6e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.38 1e-49 196 Ta.21342.1.S1_x_at AB029936.1 Chitinase 3 - 1e+1 At4g35770 SEN1 (SENESCENCE 1) C.G. S.X.
0.39 8e-48 190 Ta.1929.1.S1_at CK212185 - - 4e-5 At2g43610 glycoside hydrolase family 19 protein C.G. S.X.
0.34 7e-33 141 TaAffx.128418.43.S1_at BJ252866 Chitinase 3 - 1e+0 At3g06868 unknown protein C.G. S.X.
0.35 2e-23 109 Ta.2783.1.S1_at AB029935.1 chitinase 2 - 2e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e+0 34 Arabidopsis thaliana At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV - - - C.G. S.X.
0.07 1e-1 38 Glycine max Gma.2833.1.S1_s_at AF202731.1 chitinase class I - 9e-3 At4g01700 chitinase, putative C.G. S.X.
0.57 6e-155 545 Hordeum vulgare Contig2517_s_at Contig2517 - - 2e-6 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.38 3e-18 93 Oryza sativa Os06g0726200 AK061042.1 - Endochitinase precursor (EC 3.2.1.14) 2e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.09 1e-1 38 Populus trichocarpa PtpAffx.77318.2.S1_at CX658035 hypothetical protein - 5e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.04 8e-2 36 Vitis vinifera 1606625_at CF603972 hypothetical protein LOC100257850 - 1e-1 At2g43590 chitinase, putative C.G. S.X.
0.19 5e-13 73 Zea mays Zm.201.1.S1_at L16798.1 class I acidic chitinase - 8e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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