Gene omics information

Query gene ID	TaAffx.132315.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.8	TaAffx.132315.2.S1_x_at	BE493709	-	-	3e-22	At5g59690	histone H4	S.X.	H.G.	Please select
0.67	86.3	TaAffx.132315.2.S1_at	BE493709	-	-	3e-22	At5g59690	histone H4	S.X.	H.G.	Please select
0.44	64.5	TaAffx.59597.1.S1_at	CA598223	-	-	4e+0	At1g68430	unknown protein	S.X.	H.G.	Please select
0.33	46.9	TaAffx.111548.1.S1_at	CA638087	-	-	2e-1	At1g07750	cupin family protein	S.X.	H.G.	Please select
0.15	17.1	TaAffx.51774.1.S1_at	CA719107	-	-	2e-5	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please select
0.06	7.6	TaAffx.113263.11.S1_at	CA601426	-	-	5e-6	At5g65360	histone H3	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
26.6	99.8	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
25.8	99.8	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
14.8	99.5	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8	97.9	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	987	TaAffx.132315.2.S1_at	BE493709	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.64	2e-175	615	Ta.10329.3.S1_at	CK217164	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	1e-154	545	Ta.10329.13.S1_a_at	BJ217006	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.43	2e-150	531	Ta.10329.28.S1_at	BJ273114	-	-	1e-19	At5g59970	histone H4	C.G.	S.X.	Please select
0.43	2e-150	531	Ta.10329.28.S1_x_at	BJ273114	-	-	1e-19	At5g59970	histone H4	C.G.	S.X.	Please select
0.52	7e-150	529	Ta.10329.27.S1_at	BJ219603	-	-	6e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-148	525	Ta.10329.23.S1_at	CK217595	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	4e-148	523	Ta.10329.19.S1_x_at	BJ216862	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	4e-148	523	Ta.10329.1.S1_x_at	BJ240295	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	3e-22	105	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.57	1e-93	343	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.75	3e-166	583	Hordeum vulgare	Contig159_at	Contig159	-	-	8e-17	At5g59690	histone H4	C.G.	S.X.	Please select
0.58	1e-143	510	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	4e-7	56	Populus trichocarpa	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	3e-23	107	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.50	9e-126	448	Zea mays	Zm.1208.3.A1_a_at	BM268655	Histone H4	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage