Gene omics information

Query gene ID	TaAffx.129191.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.129191.1.S1_at	CD906345	-	-	3e-5	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.106044.1.S1_s_at	CA725446	-	-	2e+0	Atmg00550	-	S.X.	H.G.	Please select
0.67	86.3	Ta.3775.1.S1_at	BJ247563	-	-	8e-6	At4g38470	protein kinase family protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.113977.1.S1_s_at	CA730611	-	-	5e+0	At4g32110	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.33	46.9	Ta.1819.2.S1_a_at	CK163608	-	-	4e-78	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	S.X.	H.G.	Please select
0.21	25.5	Ta.22868.2.S1_x_at	CA609685	-	-	9e-20	At5g59160	TOPP2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.3	98.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.0	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7	97.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-10	67	TaAffx.45339.1.A1_at	CK162455	-	-	5e-4	At5g09760	pectinesterase family protein	C.G.	S.X.	Please select
0.03	1e-10	67	TaAffx.13595.1.S1_at	CK213837	-	-	9e+0	At5g42250	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.05	1e-10	67	TaAffx.128482.2.S1_at	CK215480	-	-	2e-2	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please select
0.05	1e-10	67	Ta.9411.3.S1_x_at	CA499635	-	-	2e-4	At1g16810	unknown protein	C.G.	S.X.	Please select
0.04	1e-10	67	Ta.7449.1.S1_at	BJ263886	-	-	2e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.04	1e-10	67	Ta.7387.1.A1_at	BJ306191	-	-	8e+0	At4g11653	RALFL29 (RALF-LIKE 29)	C.G.	S.X.	Please select
0.04	1e-10	67	Ta.3425.2.S1_x_at	CK171168	-	-	3e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.03	1e-10	67	Ta.29926.1.S1_at	CK215883	-	-	7e-17	At3g10350	anion-transporting ATPase family protein	C.G.	S.X.	Please select
0.03	1e-10	67	Ta.2946.1.S1_at	BQ161671	-	-	6e-1	At1g26740	structural constituent of ribosome	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-5	50	Arabidopsis thaliana	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-10	67	Glycine max	GmaAffx.44139.1.S1_at	AW756154	-	-	2e+0	At5g38195	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.55	0	1061	Hordeum vulgare	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.31	2e-50	200	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-16	85	Populus trichocarpa	PtpAffx.41318.1.S1_a_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-5	48	Vitis vinifera	1618386_at	BQ800555	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.33	7e-72	270	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage