CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.129158.1.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 98.5 TaAffx.129158.1.A1_at CA673700 - - 8e-3 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) S.X. H.G.
0.40 58.4 TaAffx.9320.1.S1_at BJ250015 - - 3e-1 At5g14105 unknown protein S.X. H.G.
0.29 39.2 TaAffx.63964.1.S1_at BJ322405 - - 4e-1 At3g19950 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.22 27.1 Ta.22461.2.S1_at CK205720 - - 5e+0 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) S.X. H.G.
0.20 24.0 Ta.4729.1.S1_at BJ273107 - - 1e-27 At3g01150 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) S.X. H.G.
0.18 21.0 Ta.3377.1.S1_at CA649280 - - 1e-11 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative S.X. H.G.
0.18 21.0 Ta.2803.1.S1_at BJ322551 - - 1e+0 At5g46030 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.8 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.8 98.4 GSM139915 Anther pre-meiosis rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1 96.4 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8 96.0 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM139920 Anther diplotene-anaphaseI rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0 94.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0 94.3 GSM111211 genotype B11 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 3e-135 482 TaAffx.129158.2.A1_at CA736250 - - 1e+0 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.08 4e-17 89 TaAffx.27683.1.S1_at CA672363 - - 1e+1 At5g17090 - C.G. S.X.
0.09 4e-17 89 Ta.21438.2.A1_x_at CA666521 - - 1e+1 At5g42770 - C.G. S.X.
0.08 4e-17 89 Ta.21327.2.S1_x_at CA670541 - - 8e-8 At2g45070 SEC61 BETA C.G. S.X.
0.08 4e-17 89 Ta.21327.2.S1_at CA670541 - - 8e-8 At2g45070 SEC61 BETA C.G. S.X.
0.07 2e-16 87 Ta.24706.1.S1_x_at CA631048 - - 5e+0 At2g31570 ATGPX2 (GLUTATHIONE PEROXIDASE 2) C.G. S.X.
0.07 2e-16 87 Ta.24706.1.S1_at CA631048 - - 5e+0 At2g31570 ATGPX2 (GLUTATHIONE PEROXIDASE 2) C.G. S.X.
0.07 4e-14 79 TaAffx.111754.1.S1_at CA670964 - - 2e+1 At5g63225 - C.G. S.X.
0.08 4e-14 79 Ta.24857.2.S1_a_at CA669717 - - 2e-1 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-3 42 Arabidopsis thaliana At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. - - - C.G. S.X.
0.09 3e-6 54 Glycine max GmaAffx.49521.1.S1_at AW348568 - - 1e-19 At5g65780 ATBCAT-5 C.G. S.X.
0.42 1e-175 615 Hordeum vulgare Contig8040_at Contig8040 - - 6e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.20 2e-94 347 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.11 1e-8 61 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617283_at CF372456 hypothetical LOC100245758 - 4e-20 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.23 2e-29 129 Zea mays Zm.17942.1.A1_at CK827838 hypothetical protein LOC100192912 - 1e-7 At5g65780 ATBCAT-5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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