CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.129081.2.S1_s_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.129081.2.S1_s_at CA608630 - - 2e-2 At4g32714 SCRL25 (SCR-Like 25) S.X. H.G.
0.83 93.4 Ta.29930.1.S1_at BJ273225 - - 5e+0 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein S.X. H.G.
0.57 79.2 TaAffx.71016.1.A1_at BE424472 - - 1e+0 At3g22930 calmodulin, putative S.X. H.G.
0.44 64.5 Ta.424.1.S1_at CA644335 - - 5e+0 At4g02370 unknown protein S.X. H.G.
0.28 39.2 Ta.25475.1.S1_x_at BT009449.1 - - 2e-7 At4g31550 WRKY11 S.X. H.G.
0.26 33.6 Ta.16082.2.S1_at CK211295 - - 2e+0 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.4 99.7 GSM143508 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
19.3 99.7 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
17.1 99.6 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
14.2 99.5 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.0 99.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.4 99.2 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.3 99.0 GSM143523 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.2 99.0 GSM138184 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.8 98.9 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.9 98.7 GSM143511 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1037 TaAffx.129081.2.S1_at CA608630 - - 2e-2 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.52 4e-139 494 Ta.29930.1.S1_at BJ273225 - - 5e+0 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein C.G. S.X.
0.14 9e-23 107 TaAffx.30729.1.S1_at CA622593 - - 1e+0 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.02 3e-1 36 Ta.25533.1.S1_at AJ612615 - - 2e-14 At3g54540 ATGCN4 C.G. S.X.
0.03 4e+0 32 TaAffx.58393.1.S1_at CA619998 - - 4e+0 At2g23610 MES3 (METHYL ESTERASE 3) C.G. S.X.
0.04 4e+0 32 TaAffx.2888.1.S1_at CA593739 - - 9e-23 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) C.G. S.X.
0.04 4e+0 32 Ta.666.1.A1_at BE499016 - - 3e-1 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
0.01 4e+0 32 Ta.556.1.S1_at CA671780 - - 1e+0 At3g43960 cysteine proteinase, putative C.G. S.X.
0.01 4e+0 32 Ta.556.1.S1_x_at CA671780 - - 1e+0 At3g43960 cysteine proteinase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 40 Arabidopsis thaliana At4g32714 3770576 SCRL25 (SCR-Like 25) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). - - - C.G. S.X.
0.04 2e+0 34 Glycine max Gma.13098.1.A1_s_at CD393098 - - 3e+0 At5g27880 zinc finger (C2H2 type) family protein C.G. S.X.
0.48 6e-127 452 Hordeum vulgare Contig12026_at Contig12026 - - 3e-2 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.16 4e-14 79 Oryza sativa Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.618.14.A1_at CK094070 - - 5e-1 At3g45555 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1622786_at CF207035.1 hypothetical protein LOC100246765 - 2e-8 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) C.G. S.X.
0.28 5e-38 157 Zea mays Zm.9079.1.A1_at CN844993 hypothetical protein LOC100217287 - 6e-3 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage