Gene omics information

Query gene ID	TaAffx.128848.3.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	82.0	TaAffx.128848.3.S1_s_at	CA649248	-	-	4e+0	At3g08600	unknown protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.128848.3.S1_at	CA649248	-	-	4e+0	At3g08600	unknown protein	S.X.	H.G.	Please select
0.36	51.9	Ta.18282.1.S1_x_at	CA615952	-	-	5e+0	At5g28040	transcription regulator	S.X.	H.G.	Please select
0.33	46.9	TaAffx.83758.1.S1_s_at	CA651869	-	-	2e-8	At1g14000	VIK (VH1-INTERACTING KINASE)	S.X.	H.G.	Please select
0.20	24.0	Ta.18768.2.S1_at	CA636388	-	-	3e+0	At5g05930	guanylyl cyclase-related (GC1)	S.X.	H.G.	Please select
0.16	18.2	TaAffx.92837.1.S1_at	BJ245557	-	-	3e-10	At3g05820	beta-fructofuranosidase/ catalytic	S.X.	H.G.	Please select
0.14	15.8	Ta.7354.1.S1_at	CK215574	-	-	6e-1	At3g19200	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
12.9	99.4	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
11.6	99.3	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
10.1	99.2	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
10.0	99.1	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
9.5	99.1	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.5	99.1	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.1	98.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1086	TaAffx.128848.3.S1_at	CA649248	-	-	4e+0	At3g08600	unknown protein	C.G.	S.X.	Please select
0.48	3e-121	434	Ta.27951.1.A1_at	BJ320954	-	-	6e-4	At3g05150	sugar transporter family protein	C.G.	S.X.	Please select
0.48	3e-121	434	Ta.27951.1.A1_x_at	BJ320954	-	-	6e-4	At3g05150	sugar transporter family protein	C.G.	S.X.	Please select
0.49	4e-99	361	TaAffx.128848.1.S1_at	CD871122	-	-	2e+0	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please select
0.22	2e-24	113	TaAffx.128848.2.S1_at	BJ295634	-	-	4e+0	At1g11475	NRPB10	C.G.	S.X.	Please select
0.23	6e-21	101	Ta.3938.2.S1_at	CD931721	-	-	9e-3	At1g19450	integral membrane protein, putative / sugar transporter family protein	C.G.	S.X.	Please select
0.15	3e-13	75	TaAffx.141492.1.S1_at	CA633696	-	-	3e+0	At5g67350	unknown protein	C.G.	S.X.	Please select
0.29	5e-12	71	TaAffx.8405.1.S1_at	CA626040	-	-	4e+0	At3g57950	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.30759.1.S1_x_at	CD911744	-	-	1e-2	At1g19450	integral membrane protein, putative / sugar transporter family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At3g08600	820007	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.C10000108_at	PsAffx.C10000108	-	-	2e-1	Atcg00280	-	C.G.	S.X.	Please select
0.57	8e-179	624	Hordeum vulgare	Contig875_s_at	Contig875	-	-	2e-3	At3g05150	sugar transporter family protein	C.G.	S.X.	Please select
0.32	1e-69	264	Oryza sativa	Os05g0567800	AK108622.1	-	Integral membrane protein	3e-6	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.118180.1.S1_at	CK106825	-	-	9e-1	At5g01980	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1620830_at	CD797295	hypothetical protein LOC100247627	-	1e+1	At5g39330	unknown protein	C.G.	S.X.	Please select
0.40	8e-49	192	Zea mays	Zm.18248.1.A1_at	CN844167	solute carrier family 2, facilitated glucose transporter member 8	-	1e-1	At3g05160	sugar transporter, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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