Gene omics information

Query gene ID	TaAffx.128686.3.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.1	TaAffx.128686.3.A1_at	BQ802458	-	-	3e-1	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.55	76.8	Ta.7378.37.S1_at	BJ306762	-	-	3e-20	At1g07790	HTB1	S.X.	H.G.	Please select
0.54	75.5	TaAffx.132315.3.S1_x_at	CD873027	-	-	9e-14	At5g59690	histone H4	S.X.	H.G.	Please select
0.51	73.0	Ta.7378.37.S1_x_at	BJ306762	-	-	3e-20	At1g07790	HTB1	S.X.	H.G.	Please select
0.50	72.4	Ta.7378.27.S1_x_at	BJ220679	-	-	3e-20	At1g07790	HTB1	S.X.	H.G.	Please select
0.49	69.7	Ta.7378.21.S1_at	BJ310041	Histone H2B	-	6e-18	At1g07790	HTB1	S.X.	H.G.	Please select
0.49	69.7	Ta.7378.27.S1_at	BJ220679	-	-	3e-20	At1g07790	HTB1	S.X.	H.G.	Please select
0.48	69.0	Ta.7378.12.S1_x_at	BQ295477	-	-	5e-26	At1g07790	HTB1	S.X.	H.G.	Please select
0.47	67.9	Ta.2876.2.A1_at	CK213813	-	-	6e-12	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	S.X.	H.G.	Please select
0.46	66.8	Ta.7378.2.S1_x_at	CK151738	Protein H2B-8	-	4e-20	At1g07790	HTB1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.6	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
14.0	99.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.2	99.5	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.8	99.4	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
11.1	99.3	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.6	99.2	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.1	99.2	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	1e-173	609	Ta.24742.1.S1_x_at	BU101162	-	-	1e-4	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.61	2e-135	482	Ta.13514.1.S1_at	BJ305898	-	-	4e-1	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.63	4e-127	454	Ta.28802.3.S1_at	BJ228498	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.55	3e-118	424	Ta.28802.2.S1_at	CD888660	-	-	1e-4	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.47	8e-110	397	Ta.27657.11.S1_x_at	BJ318011	-	-	7e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.49	3e-109	395	Ta.27657.2.S1_x_at	CD934994	-	-	7e-15	At1g08880	H2AXA	C.G.	S.X.	Please select
0.46	3e-106	385	Ta.27657.12.S1_at	CD869995	Protein H2A /// Protein H2A	-	3e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.45	7e-104	377	Ta.27657.5.S1_x_at	BJ320258	-	-	1e-4	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.45	7e-104	377	Ta.27657.5.S1_at	BJ320258	-	-	1e-4	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-1	36	Arabidopsis thaliana	At4g27230	828831	HTA2 (histone H2A)	Encodes HTA2, a histone H2A protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-10	67	Glycine max	PsAffx.C4000035_at	PsAffx.C4000035	-	-	4e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.65	1e-171	601	Hordeum vulgare	Contig54_s_at	Contig54	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.53	9e-108	391	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	5e-7	56	Populus trichocarpa	Ptp.6653.1.S1_at	CV238011	histone 2	-	1e-26	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	7e-15	79	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select
0.60	2e-96	351	Zea mays	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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