Gene omics information

Query gene ID	TaAffx.12568.3.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.12568.3.S1_at	CA649670	-	-	3e+0	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	S.X.	H.G.	Please select
0.36	51.9	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.23	29.0	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	S.X.	H.G.	Please select
0.22	27.1	TaAffx.112556.1.S1_at	CA622998	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	S.X.	H.G.	Please select
0.21	25.5	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	S.X.	H.G.	Please select
0.07	8.6	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.8	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
23.5	99.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
19.2	99.7	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
18.1	99.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
16.9	99.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
16.7	99.6	GSM111229	genotype B65 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
11.7	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.0	99.0	GSM111144	genotype AC Domain developing seed at 5 days after anthesis, biological rep1	GSE4929	wheat expression level polymorphism study parental genotypes 2 biological reps
7.4	98.6	GSM250891	TcLr1_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	4e-92	337	TaAffx.12568.2.S1_s_at	BJ237226	-	-	4e+0	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	C.G.	S.X.	Please select
0.31	6e-48	190	TaAffx.12568.1.S1_at	BJ253952	-	-	8e+0	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	C.G.	S.X.	Please select
0.03	9e-1	34	TaAffx.119986.1.S1_at	BJ249181	-	-	3e-1	At4g16240	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	34	TaAffx.106711.1.S1_at	CA713161	-	-	1e+1	Atmg01140	-	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.25015.1.S1_at	CA708213	-	-	4e+0	At3g60370	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	TaAffx.19014.1.S1_at	CD933365	-	-	1e+1	At5g46440	-	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.128541.13.S1_at	CA697670	-	-	4e+0	At5g26692	-	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.11967.2.S1_at	CA726847	-	-	2e+1	At5g20700	senescence-associated protein-related	C.G.	S.X.	Please select
0.04	3e+0	32	Ta.9683.1.A1_at	BJ226337	-	-	5e-1	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g45230	841096	defective chloroplasts and leaves protein-related / DCL protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+1	30	Glycine max	PsAffx.C78000032_at	PsAffx.C78000032	-	-	4e+0	At1g07747	-	C.G.	S.X.	Please select
0.17	1e-7	56	Hordeum vulgare	Contig8552_at	Contig8552	-	-	2e+0	At4g15830	binding	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os03g0191400	9631.m00863	-	Ras GTPase family protein	3e-21	At4g39890	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Populus trichocarpa	PtpAffx.210316.1.S1_x_at	pmrna20300	NAC domain protein, IPR003441	-	2e-1	At5g27290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	28	Vitis vinifera	1620697_at	CF568836	-	-	1e+0	At3g13857	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.326.1.A1_at	AI670508	-	-	8e-1	At2g26860	F-box family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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