Gene omics information

Query gene ID	TaAffx.12563.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.12563.1.A1_at	BJ254471	-	-	1e-3	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	S.X.	H.G.	Please select
0.60	81.0	Ta.3743.1.A1_a_at	BJ254879	-	-	5e+0	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.59	79.8	Ta.3782.3.A1_x_at	BJ254248	-	-	3e-4	At1g01780	LIM domain-containing protein	S.X.	H.G.	Please select
0.53	74.9	Ta.11772.1.A1_at	BQ170765	-	-	7e+0	At5g60490	FLA12	S.X.	H.G.	Please select
0.50	72.4	Ta.10297.1.A1_at	BJ250042	-	-	2e-2	At4g21445	unknown protein	S.X.	H.G.	Please select
0.40	58.4	Ta.3934.1.A1_at	BJ254519	-	-	4e+0	At3g13130	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
114.1	100.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
92.1	100.0	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
88.4	100.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
28.3	99.8	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
27.7	99.8	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
16.9	99.6	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
0.1	39.8	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
0.0	30.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
0.0	30.7	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
0.0	30.7	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-15	83	TaAffx.63432.1.S1_at	BQ802347	-	-	4e-4	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please select
0.06	1e-6	54	Ta.12910.1.S1_at	BQ281259	-	-	1e+0	At3g52620	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.21031.1.S1_at	AY543530.1	-	-	4e-5	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.4922.1.S1_x_at	CA728503	-	-	4e+0	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.4922.1.S1_at	CA728503	-	-	4e+0	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.4041.3.A1_at	BJ264964	-	-	2e+0	At4g35750	Rho-GTPase-activating protein-related	C.G.	S.X.	Please select
0.04	1e+0	34	Ta.3596.3.S1_at	CA708121	-	-	1e-9	At5g15490	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.17495.1.S1_at	CA621291	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.11671.1.S1_at	BQ170572	-	-	9e-7	At2g41690	AT-HSFB3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-3	44	Arabidopsis thaliana	At1g13250	837885	GATL3 (Galacturonosyltransferase-like 3)	Encodes a protein with putative galacturonosyltransferase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-7	56	Glycine max	Gma.16749.1.S1_at	CD407063	-	-	3e-18	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.14	2e-10	65	Hordeum vulgare	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please select
0.36	2e-114	412	Oryza sativa	Os03g0359600	AK072250.1	-	Avr9/Cf-9 rapidly elicited protein 231	6e-5	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	4e-4	46	Populus trichocarpa	PtpAffx.25163.2.A1_at	CV230336	glycosyltransferase, CAZy family GT8	-	7e-21	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-3	42	Vitis vinifera	1615986_at	CF214784	hypothetical protein LOC100265777	-	1e+0	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	C.G.	S.X.	Please select
0.20	3e-39	161	Zea mays	Zm.3033.1.S1_at	BU097751	-	-	7e+0	At2g34470	UREG (UREASE ACCESSORY PROTEIN G)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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