Gene omics information

Query gene ID	TaAffx.12446.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	TaAffx.12446.1.S1_at	CA649756	-	-	1e-9	At1g78800	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.39	56.1	TaAffx.75110.2.S1_at	BJ301949	-	-	1e+0	At3g06545	unknown protein	S.X.	H.G.	Please select
0.34	48.1	Ta.8150.3.S1_a_at	CA641945	-	-	1e-3	At5g41950	binding	S.X.	H.G.	Please select
0.30	40.9	TaAffx.132555.1.S1_at	BJ274067	-	-	3e-12	At5g11730	unknown protein	S.X.	H.G.	Please select
0.29	39.2	Ta.12338.2.S1_a_at	CA743187	-	-	5e-6	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	S.X.	H.G.	Please select
0.26	33.6	TaAffx.467.2.S1_s_at	CA608654	-	-	5e-6	At5g19000	ATBPM1 (BTB-POZ and MATH domain 1)	S.X.	H.G.	Please select
0.26	33.6	Ta.1714.2.S1_at	CD877056	-	-	4e-132	At3g11130	clathrin heavy chain, putative	S.X.	H.G.	Please select
0.23	29.0	Ta.8239.1.S1_a_at	CN013171	-	-	2e+0	At3g04780	-	S.X.	H.G.	Please select
0.23	29.0	Ta.1205.2.S1_at	BG908110	-	-	3e+0	At5g40990	GLIP1 (GDSL LIPASE1)	S.X.	H.G.	Please select
0.22	27.1	Ta.7772.2.S1_a_at	CA737156	-	-	2e-7	At2g43770	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM138158	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM111206	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138164	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM138194	genotype J15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
3.1	94.5	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM138174	genotype A81 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	TaAffx.132151.1.S1_at	CK208238	-	-	2e-3	At1g33520	MOS2 (modifier of snc1, 2)	C.G.	S.X.	Please select
0.02	2e+1	30	TaAffx.70447.1.A1_at	CD492045	-	-	4e-1	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.02	2e+1	30	TaAffx.64527.1.S1_at	BJ299037	-	-	8e-6	At5g08415	lipoic acid synthase family protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.64517.1.S1_at	BJ293266	-	-	1e+0	At3g26561	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.25283.1.S1_at	CA703189	-	-	1e+0	At3g45555	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.106948.1.S1_at	CA708590	-	-	2e-1	At4g23380	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.105602.1.S1_at	CA732083	-	-	3e-1	At2g34770	FAH1 (FATTY ACID HYDROXYLASE 1)	C.G.	S.X.	Please select
0.01	2e+1	30	Ta.9372.1.S1_at	BJ286526	-	-	5e-15	At5g13420	transaldolase, putative	C.G.	S.X.	Please select
0.01	2e+1	30	Ta.9372.1.S1_x_at	BJ286526	-	-	5e-15	At5g13420	transaldolase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-9	63	Arabidopsis thaliana	At1g78800	844216	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	HgAffx.14227.1.S1_at	CB299913	-	-	8e-18	At2g30520	RPT2 (ROOT PHOTOTROPISM 2)	C.G.	S.X.	Please select
0.27	6e-56	216	Hordeum vulgare	Contig12074_at	Contig12074	-	-	2e-9	At1g78800	glycosyl transferase family 1 protein	C.G.	S.X.	Please select
0.17	1e-53	210	Oryza sativa	Os04g0589600	AK061833.1	-	Glycosyl transferase, group 1 domain containingprotein	6e-14	At1g78800	glycosyl transferase family 1 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.99805.1.A1_at	DN488740	-	-	3e+0	At4g15715	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1616943_at	CB342719	hypothetical protein LOC100244214	-	2e+0	At3g42786	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.254.1.A1_at	AI670289	-	-	3e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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