Gene omics information

Query gene ID	TaAffx.122619.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.6	TaAffx.122619.1.S1_at	CA731643	-	-	4e+0	At4g18500	unknown protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.107803.1.S1_at	CA695052	-	-	3e-2	At5g27440	unknown protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.52280.1.S1_at	CA710046	-	-	5e+1	Atmg01000	-	S.X.	H.G.	Please select
0.29	39.2	TaAffx.5794.1.S1_at	CA610337	-	-	4e-3	At5g58900	myb family transcription factor	S.X.	H.G.	Please select
0.28	39.2	TaAffx.35248.1.S1_at	CA731653	-	-	1e+0	At3g20620	F-box family protein-related	S.X.	H.G.	Please select
0.28	39.2	TaAffx.112272.1.S1_at	CA625384	-	-	2e-4	At5g42050	-	S.X.	H.G.	Please select
0.27	35.6	Ta.7537.2.S1_x_at	CA648066	-	-	1e+0	At5g22390	unknown protein	S.X.	H.G.	Please select
0.27	35.6	Ta.10689.2.S1_x_at	CA622635	-	-	4e+0	At1g21323	unknown protein	S.X.	H.G.	Please select
0.26	33.6	TaAffx.110377.1.S1_at	CA659579	-	-	3e-1	At5g01850	protein kinase, putative	S.X.	H.G.	Please select
0.24	30.3	Ta.20317.1.S1_x_at	CA678146	-	-	4e+0	At5g59850	40S ribosomal protein S15A (RPS15aF)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
11.1	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.4	98.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.3	97.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	TaAffx.128418.127.A1_x_at	CA730835	-	-	1e+0	At2g15830	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.2830.1.S1_at	CD934919	-	-	4e-6	At3g14100	oligouridylate-binding protein, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.1343.1.S1_at	BE425574	-	-	3e-5	At4g15260	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.64327.1.S1_at	BJ304361	-	-	8e-1	At2g01300	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.54988.1.S1_at	CA673345	-	-	2e+1	At2g46540	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.54988.1.S1_x_at	CA673345	-	-	2e+1	At2g46540	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.4918.1.S1_at	CA728577	-	-	4e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.01	4e+0	32	TaAffx.129077.1.A1_at	CA743399	-	-	6e-5	At2g46790	APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.128682.2.S1_at	CA678872	-	-	4e-1	At5g42000	ORMDL family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At4g18500	827582	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.5049.2.S1_at	BI470211	-	-	8e-1	At2g38640	unknown protein	C.G.	S.X.	Please select
0.14	2e-25	115	Hordeum vulgare	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os05g0125600	CF331344	-	Conserved hypothetical protein	1e+1	At5g50200	WR3 (WOUND-RESPONSIVE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-2	38	Populus trichocarpa	PtpAffx.132333.1.A1_at	BP933961	hypothetical protein	-	2e-1	At1g49015	eukaryotic translation initiation factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1622279_at	CF200642.1	-	-	3e+0	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.15800.4.A1_at	CK370627	actin-depolymerizing factor 3	-	3e-11	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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