CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.120209.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.120209.1.S1_at BJ236482 - - 3e-1 At2g38210 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) S.X. H.G.
0.09 10.4 TaAffx.81513.1.S1_at CA698826 - - 2e+1 At4g31740 - S.X. H.G.
0.06 7.6 Ta.10947.1.S1_at CK152049 - - 3e+0 At4g08280 - S.X. H.G.
0.06 7.6 TaAffx.113489.3.S1_at CA692052 - - 4e+0 At3g52561 unknown protein S.X. H.G.
0.04 5.8 Ta.9462.1.S1_at CK211936 - - 2e-5 At1g07230 hydrolase, acting on ester bonds S.X. H.G.
0.02 3.6 Ta.28498.1.S1_at CK154432 - - 3e+0 At5g64330 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.6 99.7 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.1 99.4 GSM298068 Leaf tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
10.7 99.2 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.2 98.8 GSM246399 SB3_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
7.7 98.7 GSM111218 genotype F29 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.6 98.7 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.0 98.5 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250915 TcLr1_7dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM138147 genotype G13 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2 98.1 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 2e-45 182 TaAffx.37674.1.S1_at BJ269380 - - 4e+0 At3g29036 unknown protein C.G. S.X.
0.12 6e-18 91 TaAffx.105993.1.S1_at CA726866 - - 3e-1 At1g25054 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase C.G. S.X.
0.14 2e-11 69 TaAffx.53325.1.S1_at CA693585 - - 4e+0 At3g11770 nucleic acid binding C.G. S.X.
0.08 1e-6 54 TaAffx.37752.1.S1_at BJ266976 - - 1e+1 At5g35760 beta-galactosidase C.G. S.X.
0.10 3e-4 46 TaAffx.38200.1.S1_at BJ245366 - - 1e+0 At5g46730 glycine-rich protein C.G. S.X.
0.05 3e-4 46 Ta.8398.1.A1_at BQ161841 - - 2e-1 At3g60620 phosphatidate cytidylyltransferase family protein C.G. S.X.
0.04 2e-2 40 TaAffx.65185.1.S1_at BJ257716 - - 1e+0 At2g37925 COPT4 C.G. S.X.
0.04 2e-2 40 TaAffx.23064.1.S1_at CA740990 - - 3e-1 At4g22600 unknown protein C.G. S.X.
0.04 2e-2 40 Ta.3447.2.S1_at BG908341 - - 3e+0 At3g12630 zinc finger (AN1-like) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 36 Arabidopsis thaliana At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM - - - C.G. S.X.
0.03 4e-1 36 Glycine max GmaAffx.81331.1.S1_at BF071436 - - 7e-2 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.09 6e-10 63 Hordeum vulgare Contig13227_at Contig13227 - - 2e-1 At3g52380 CP33 C.G. S.X.
0.11 1e-14 81 Oryza sativa Os07g0554900 AK071294.1 - Cyclin-like F-box domain containing protein 3e-1 At3g17160 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.249.533.S1_a_at CK097182 hypothetical protein - 4e-16 At1g16610 SR45 C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1616253_at CB973241 hypothetical protein LOC100259755 - 7e-1 At5g22720 F-box family protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.880.1.S1_at AI770800 protein kinase-like - 3e+0 At3g17100 transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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