Gene omics information

Query gene ID	TaAffx.119928.1.A1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please select
0.67	86.3	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	S.X.	H.G.	Please select
0.67	86.3	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.60	81.0	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	S.X.	H.G.	Please select
0.04	5.8	Ta.5490.1.S1_at	CD863459	-	-	5e+0	At2g36030	unknown protein	S.X.	H.G.	Please select
0.03	4.7	TaAffx.135003.1.S1_at	CA655173	-	-	4e+0	At2g47770	benzodiazepine receptor-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.1	98.5	GSM250891	TcLr1_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250904	TcLr1_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250889	Tc_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250892	TcLr1_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	3e-144	510	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.48	4e-51	200	Ta.10408.2.A1_at	CA651244	-	-	6e+0	At5g65300	unknown protein	C.G.	S.X.	Please select
0.32	3e-24	111	TaAffx.58537.1.S1_at	CA618748	-	-	1e+0	At5g05365	metal ion binding	C.G.	S.X.	Please select
0.03	9e-3	40	Ta.27092.1.S1_at	BT009092.1	-	-	1e+0	At4g25515	SLK3 (SEUSS-LIKE 3)	C.G.	S.X.	Please select
0.02	4e-2	38	Ta.27497.1.S1_at	BQ168747	-	-	1e-14	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	C.G.	S.X.	Please select
0.02	4e-2	38	Ta.12683.1.S1_at	CD889349	-	-	3e-3	At3g19950	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	1e-1	36	TaAffx.8895.2.S1_at	CA618450	-	-	2e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.04	1e-1	36	TaAffx.8895.1.S1_at	BJ252273	-	-	2e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.01	1e-1	36	TaAffx.122320.1.S1_at	BQ620251	-	-	2e-8	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	38	Arabidopsis thaliana	At1g14900	838055	HMGA (HIGH MOBILITY GROUP A)	Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-2	38	Glycine max	HgAffx.13483.1.A1_at	CB374499	-	-	2e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.40	2e-85	313	Hordeum vulgare	Contig5953_at	Contig5953	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.27	6e-27	121	Oryza sativa	Os11g0143300	AK058585.1	-	-	5e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-2	38	Populus trichocarpa	PtpAffx.53536.1.S1_at	DN498588	-	-	1e+0	At3g47690	ATEB1A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e-1	32	Vitis vinifera	1622571_at	CB970577	hypothetical protein LOC100255631	-	3e-11	At2g21230	bZIP family transcription factor	C.G.	S.X.	Please select
0.14	1e-24	111	Zea mays	Zm.325.1.A1_at	AB042268.1	response regulator 6	-	2e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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